1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGATGAGGCACTAACTGGGCTGTTGCAAAATTTGTCACTGGAAGGATTTGGTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagacatgctttaaagattaataagcaatcaaaatttgtggaatttgcttgatctattgcacttaattcttttcaaactgttgtcag
species | Vitis vinifera |
transcript | Vv07s0130g00310.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|351049571|gb|FQ429193.1|FQ429193
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|349826636|gb|FQ418727.1|FQ418727
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|349817579|gb|FQ407369.1|FQ407369
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|351018506|gb|FQ424613.1|FQ424613
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGEST: gi|351019477|gb|FQ429612.1|FQ429612
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTG
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGAEST: gi|351041001|gb|FQ443777.1|FQ443777
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGA
EST: GTCCAAGGTGGATCACGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|349816179|gb|FQ403675.1|FQ403675
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGTEST: gi|349815328|gb|FQ400483.1|FQ400483
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACCATCATGAGCTTEST: gi|349829875|gb|FQ422188.1|FQ422188
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAG CTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGAATATGGGEST: gi|349809458|gb|FQ411956.1|FQ411956
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCATGAGCTTCAATGGGATTATGGT
EST: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGAAGAG CTAGTGTGGCTTAACCCTGACGACAATCAT
genomic: GTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagac ... ctgttgtcagCTAGTGTGGCTTAACCCTGACAACAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGAGGCACTAACTGGGCTGTTGCAAAATTTGTCACTGGAAGGATTTGGTCCAAGGTGGATCAGGCCACTTCCACCAAGGCTTCTGATACAAGATGAGgcaagaagacatgctttaaagattaataagcaatcaaaatttgtggaatttgcttgatctattgcacttaattcttttcaaactgttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG