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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTTCAGGTAGAAGGGAAAGCAATATTTCAGCTCAATGGCCCTGATTCTGATCTGATCCTGAATACACTTATTTTCAACTCGTTTGTCTTCTGCCAGgtacttttggaagtcctctttgtaaactttgtttcaagcatctatgtgataaatgaatggtagattatgataggcaagtttagctttttttttcattaca...

Basic information

species Vitis vinifera
transcript Vv07s0129g00180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G40130.1 (Glycine max), 5'ss of exon 6
GTATCTTCAGGTAGAAGGGAAAGCAATATTTCAGCTCAATGGCCCTGATTCTGATCTGATCCTGAATACACTTATTTTCAACTCGTTTGTCTTCTGCCAGgtactttt-----------ggaagtcctctttgtaaactttgtt-------tca-agcatctatgtgataaatgaatggtagattatgataggcaagtttagctttttttttcattaca-
|| |||||||  |  ||| ||| |||| |||   ||  | |||||  |||| |||||  || | || || |||||||||||||| ||||||||||| ||||||  |||           |  | |  | || | ||  ||| ||       ||| ||  | | | || ||  || || | ||  | | | | |    | | | ||  |||    || || 
GTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTCAACTCATTTGTCTTCTGTCAGgtaacttttcttaaaagctgacaatttttttaggaatatttattattaaattcatagtgtatgtatgctatttgtatagaagtatcttacaag---atgtgggttgatttggttttgcag

upper sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G05190.1 (Glycine max), 5'ss of exon 6
GTATCTTCAGGTAGAAGGGAAAGCAATATTTCAGCTCAATGGCCCTGATTCTGATCTGATCCTGAATACACTTATTTTCAACTCGTTTGTCTTCTGCCAGgtacttttggaagtcctctttgtaaactttgtttcaagcatctatgtgataaatgaatggtagattatga-----taggcaagtttagctttttttttcattaca---
|| |||||||  |  ||| ||| |||| |||   ||  | |||||  |||| |||||  || | || || |||||||| ||| ||||||||||||||||||||  |||         |     ||||||  ||   |  || |||     |||  | |  || |||   |     |   ||  | | | ||  |||    ||      
GTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGgtaacttttcttaaaagcag-acaaacttgtttaggaatatttattactcaaaaaattattaaattcgaagtgtcttaccagatgtgggttgatttggttttgtgcag