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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAGgtgaagtattgtctataccacccttgtgggatcagaagtagaattgttcttctataattatgacttcttttctcttttccag

Basic information

species Vitis vinifera
transcript Vv07s0129g00040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G40170.1 (Glycine max), 5'ss of exon 6
AATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAGgtgaagtattgtctataccacccttgtgggat-cagaagtagaattgttcttctataattatg-----acttcttttctcttttccag-------------------------------------
||||| ||||||||||||||||||| |||  |||| ||||||||||| |||||||| |||||| ||||||||||||||    ||  |   || |  |  |||   | |  | |  |   |||| ||||  ||  | |||      ||| | || |  ||   |                                      
AATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGgtatgcta--gctcattcatcttttgacagctataaatctcatattggtcttgaatcttgatgttgctgcttttgttgttgttcttaatattaactatgacacattcagttttttctcccttcag

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G05130.1 (Glycine max), 5'ss of exon 6
AATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAGgtgaagtattgtctataccacccttgtgggatcagaagtagaattgttcttctataattatg--acttcttttctcttttccag----------------------------------------
||||| ||||||||||||||||||| |||  |||| ||||||||||| |||||||| |||||| ||||||||||||||    ||  |   || ||    |    |    | |  | | |||| || || ||  | |||   || ||||| |  || |                                           
AATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGgtatgcta--gctcattcctttttgacagctataaatttcgtattggtcgtcaatcttgatgttgctgcttttgttgttgctcttaatattagctatgacacattcagatttttctctcttcag