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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataatgcaatgctttagccaatgtgttggaacatcttgggacggttaccatatcgtaataa...

Basic information

species Vitis vinifera
transcript Vv07s0104g01150.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgt------ttattactata-tgcagttgtttgatataatgcaatg---ctttagccaatgtg-ttggaacatcttg-ggacggttaccatatc---gtaataa---------------------------------------------------------------------
    |  |||||  ||||    |||||| |    || ||||| ||||||||||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||     | |      ||||||  ||| |    || |      |||| ||  |    |||   |  |    |     | || |  |     |||  | ||    | | |||                                                                     
CCAAGTTTCTAACATGCCGCAGGCTGATCCT---CAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G17090.1 (Glycine max), 5'ss of exon 6
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgt------ttattactatat---gcagttgtttgatataatgcaatg---ctttagccaatgtg-ttggaacatcttgggacgg-ttaccatat---cgtaataa---------------------------------------------------------------------
    |  ||||||  |||   ||||||| |    || || || ||||||||||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||     | |       |||||  |||    ||| || |      |||| ||| |    |||   || | |  |     |||| |  ||    |||  | ||    | | |||                                                                     
CCGAGTTTCTAATGCGCCGCATGCTGATCCT---CAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttcttctataatgcactattagaatacctagcatttttcccccttaattcaaggaacttttcttcagtataatcatgtcatcctatgagaaattattacatttatggattaatgcttgttatttttcatgcctaacatcttgatggaggcatatgtttgaataatcatgttttctcaatag

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataat----gcaatgctttagccaatgtgttggaa-----catcttgggacggttaccatatcgtaataa----------------------------------------------------------------
    || |||||| | |||  | |||||||    ||||| || ||||| ||||||||||||||| |  |||||||||| || || ||||||||||||||||||||||||   ||      |   | |  ||  || ||     ||||    ||| | |||||  |    |  |         ||    |  ||  || |  |   ||| |||                                                                
CCAAGCTTCTAATGTACCACATACTGATTCT---CAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagt-ctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
---GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataat----gcaatgctttagccaatgtgttggaacatc----ttgggacggttaccatatcgtaataa----------------------------------------------------------------
    || |||||| | |||  | |||||||    ||||| |  ||| | ||||||||||||||| |  |||||||||| || || |||||||||| |||||||||||||   |      | || | | |    || |||    ||||    ||| |  ||   |      |||    | ||      |  ||  || |  |   ||| |||                                                                
CCAAGCTTCTAATGTACCACATACTGATTCT---CAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacagg-actattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
----GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataatgcaatgctttagccaatgtgttggaacatcttgggacggttaccatatc-gtaataa
      |  |  | | |  ||  | |||| ||  |||  |||| ||||| |||||||| || ||| | |||||||| || ||||| ||||||||||||||||| || ||    |  |  || ||||   |    |       |||||     ||  ||   |||| |  |     ||         ||| |||| ||  ||  | 
TCACATCGCCCGACTAGGGAA-CGGTGATCCA--ACAA-ATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaagcaagaaagcctaatactccgttagttcaagctgtataagatt-tgtctttatcaatcttgtaactaataaaattttcgtttccatttccatagcag

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G03110.1 (Arabidopsis thaliana), 5'ss of exon 6
----GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataatgcaatgctttagccaatgtgttggaacatcttgggacggttaccatatcgtaataa
      |  |  | | |  ||  | |||| ||  |||  |||| ||||| |||||||| || ||| | |||||||| || ||||| ||||||||||||||||| || ||    |  |  || ||||   |    |       |||||     ||  ||   |||| |  |     ||         ||| |||| ||   ||| 
TCACATCGCCCGACTAGGGAA-CGGTGATCCA--ACAA-ATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaagcaagaaagcctaatactccgttagttcaagctgtataagatt-tgtctttatcaatcttgtaactaataaaattttcgtttccatttcc--atag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829854|gb|FQ422167.1|FQ422167
EST:     GAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAG                         GCTCCTGGTGCTTATGGACTTATGCAATATCGCATGCCACCCATGCAGAGT
genomic: GAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctca ... ctctttgtagGCTCCTGGTGCTTATGGACTTATGCAATATCGCATGCCACCCATGCAGAGT