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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACTTCTAGCAGCATTCTAGATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaacatgttttgaattgctcggtgttgatgagaaagatatatgatgctttgctggaattacagtttgaaccatgttatactatctgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0031g03090.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248254|gb|CD714073.1|CD714073
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|30327891|gb|CD011153.1|CD011153
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAGCACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|110720016|gb|EE095627.1|EE095627
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACAAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|30125799|gb|CB911138.1|CB911138
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|30133769|gb|CB919108.1|CB919108
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGANAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|351036166|gb|FQ464011.1|FQ464011
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|71855285|gb|DT004340.1|DT004340
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACAAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|110719628|gb|EE094920.1|EE094920
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|30135395|gb|CB920733.1|CB920733
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|32271216|gb|CD720375.1|CD720375
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|161716956|gb|FC068141.1|FC068141
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTACACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACAAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|110719627|gb|EE094919.1|EE094919
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|161707320|gb|FC056848.1|FC056848
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|30127312|gb|CB912651.1|CB912651
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|351044383|gb|FQ452935.1|FQ452935
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|32248260|gb|CD714079.1|CD714079
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|32268821|gb|CD717980.1|CD717980
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|351045775|gb|FQ440960.1|FQ440960
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAAAACCTTCTTT
EST: gi|110718742|gb|EE095919.1|EE095919
EST:     ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTA                         GAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAA
genomic: ATCGAGCGATTGACTCAGAAGAATCTCAGCATAAAGATTTCCTTAGACTAgtaagaaaac ... atctgtgcagGAGCATATTGAAGGGTACCATGAGTTAACTGCAAAGACGAA