Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaacagtactgttttattagcttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G00670.1 (Glycine max), 5'ss of exon 6
GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaacagtactgttttattagc-------ttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta
||| |||||| ||||||||||| ||||| | |||| |||||||||||||| | |||| || || ||||||||||||||||| ||||| || |||||| || | | |||| | || | || ||| ||||| | || ||| || || || | | || || ||
GTGATGGCCTTTCAATCTTGAGGGCAGAACTTAAAAGTCAAAAGAAGCAAGTTAAACATTTGAAAAAAAAGTCACTCTGGTCCAGAAGTTTGGAGGAGgtaactttagattactactgtacatgaatgattattatctcttattctcatctacttgacatgttttatcctttcattgtattctctatccatgtataat-------
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G16690.1 (Glycine max), 5'ss of exon 6
GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaaca-gtactgttttattagcttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta----
||| |||||||| | |||||| |||| | |||| || | || |||| | || ||||||||||||| |||||||||| ||| |||||||| ||||||| | | |||| || | | | | ||| | | || ||| || || ||| || || ||| | ||||
GTGATAGCCTTGCATTGTTGAGGGCAGAGATTAAAAGTCATATGAGGCAAATTAGACATTTAAAGAAGAAATCACTCTGGTGCAGAAGTTTAGAGGAGgtagttaacttcagactgcttctctgcacgatttgt-----ttatctttaccctcaatatcctcctccttgtttgttttatcctcatttagactatcattgtatc
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 5
--GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagc--tgaacagtactgttttattagcttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta--
||| ||||||||| |||||||| ||||| | |||| |||||||||||| | || | |||||||| || ||||||||||| || ||||| || |||||| | | |||| || | |||||| | ||| | | | |||| | || || ||| | ||||
AGGTGATGGCCTTGCATTCTTGAGGGCAGAAATTAAAAGTCAAAAGAAGCAAATTAGACAGTTAAAGAAAAAATCACTCTGGTCTAGAAGTTTGGAGGAGgtaacatcttgcttcactgcacaatacgtttttcttgt----ctctcagtatgctcctcattgtttgttttatgatttttatcctcatttatactgtcattgta
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G38370.1 (Glycine max), 5'ss of exon 6
GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaacagtactgtttt-----attagcttttctagg-----gaaatcatcaaaagtgtatatttcccccctttt-ttttccttcata--agaattggaaac--tccatta-------------------------------------------------------------------------------------
||| ||||||||| |||||||| ||||| | |||| |||||||||||| | | |||||||||| || ||||||||||| || ||||| || |||||| | | | | || | | || | |||||| | || || | ||| | ||| ||||| | || || || ||||| | |||| |
GTGATGGCCTTGCATTCTTGAGGGCAGAAATTAAAAGTCAAAAGAAGCAAATTAGGCATTTAAAGAAAAAATCACTCTGGTCTAGAAGTTTGGAGGAGgtaacatcagattgcttctctgcacaatatgtttttcttgtccctcagtatgctcctcattgtttgttttatgacttttatcctcatttgtactgtaattgtagctgatccacttataatgccaaatataatgtagagaaatcatttttatttatcataaacggagagctgagaaaaattcataatcttatggattacag
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 6
GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaacagtactgttttattagcttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta---
||| |||||| ||||||||||| ||||| | |||| ||||| |||||||| | |||| || || ||||||||||||||||| ||||| || |||||| | | | |||| || || | | || | | | || || || | |||| | | ||||| | | | || |
GTGATGGCCTTTCAATCTTGAGGGCAGAACTTAAAAGTCAAAAAAAGCAAGTTAAACATTTGAAAAAAAAGTCACTCTGGTCCAGAAGTTTGGAGGAGgtatgtttagattactattgtacatgaatgattatc--atctcttattctcgtctacttgacatgttttatc-ctttcattgcattctatccatgtataatgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718502|gb|FC069286.1|FC069286EST: AAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGC
genomic: AAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaac ... cagactgcagGTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAGgtagctgaacagtactgttttattagcttttctagggaaatcatcaaaagtgtatatttccccccttttttttccttcataagaattggaaactccatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa