1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCTAAGTGTCGGAAATTTGAGGATGAGCTTTCCAGGATGAAACGTGAAACTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttggtataacattttataaacatagtaatttttccttttctagaagcacaaatatagaatgattcttgaaaatagggtcaaaattatgagttca...
species | Vitis vinifera |
transcript | Vv07s0031g02720.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAG GAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACCEST: gi|28970952|gb|CB349985.1|CB349985
genomic: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttgg ... aacatggcagGAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACC
EST: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAG GAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACCEST: gi|110375942|gb|EC940972.1|EC940972
genomic: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttgg ... aacatggcagGAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACC
EST: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAG GAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACCEST: gi|30133937|gb|CB919276.1|CB919276
genomic: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttgg ... aacatggcagGAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACC
EST: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAG GAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACC
genomic: CTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttgg ... aacatggcagGAGAAGGAGCTAGCAGTGGCTGCCAGTAAGCTTGCAGAGTGCCAGAAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTAAGTGTCGGAAATTTGAGGATGAGCTTTCCAGGATGAAACGTGAAACTGAGCTTCGGAATTTGGCAAGTTCAAATGGTGAATTGAAGATAAAGCAGgtcagtttggtataacattttataaacatagtaatttttccttttctagaagcacaaatatagaatgattcttgaaaatagggtcaaaattatgagttca
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta