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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatctaatttgattcatcatttttgcgaagtggtcttctgatgtgttcaagctcatcatctgctccttaaattctcag

Basic information

species Vitis vinifera
transcript Vv07s0031g02060.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 6
TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatcta-atttgat--tcatcatttttgcgaagtggtcttctgatgtgttcaagctcatcatctgctc-cttaaattctcag---------------------------------------------
| || |||||||||||||||||| ||||||||||  |||||||||||||||||||||  ||| |||  |||||||||||||||||||| || ||||| |||||| |  ||| |||  | | || || |  |  | |||| |  ||  ||   || |  |||   ||||   |||   | ||   ||  |  || |                                              
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCACTCAGgtaattgagcctacctaccatatctggtgatttttatttct-tgatttgcatttattctgtacccaagtatatctcattctaattttcacgcttaaaagtcctactttcttgctcaagattggctttttacattgcggcag

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 6
TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatctaatttgattcatcatttttgc--gaagtggtcttctgatgtgttcaagctcatcatctgctc-cttaaattctcag---------------------------------------------
| || |||||||||||||||||| ||||||||||  |||||||||||||||||||||  ||| |||  |||||||||||||||||||| || || || |||||| |  ||| |||  | |  |    | ||  ||||| |  ||  ||   || |  |||   ||||   |||   | ||   ||  || || |                                              
TCATCTGTGAAATATGGTTTGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATACAGCGAGAAACATACCTTGATCGTCTGTCGCTCAGgtaattgagcctacctaccatatctggtgatttttttttcttgatttgcatttattctgtacccaagtatatctcattctaattttcatgcttaaaagtcctactatgttgctcaagattggctttttacattgctgcag

upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 5
TTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGgtaactaggccaaccatctaatttgattcatcatttttgcgaagtggtcttctgatgtgttcaagct-catcatctgctccttaaattctcag
|||||||||| |||||||||||| | |||||| |||| |||||||| || |||||||  ||  |    |||||||| ||| | || || |||||| |||||||  ||       |||||  | ||  | || |   ||| ||| || |       ||| ||   | |  |     |  |  ||   ||  |||
TTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATGGTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGgtactta-------catct--tgtgggttattacacttg-gaaatgttaaaactttgttttggggatataatccttattttttttgtttgcag