Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAGgtaaattc----tcaaccagatcctcttattaattcctttgcatagaaaactgta-accatttaaatctt-------ctggatttgttgcgaca-atgagctgatttcaatgt--------------------------------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTATATACTTGGAGCCTTGGCATGCTGATATTTTTGAGTTCCTTGATTTAAGAAAGAACCATGGAAAGgtaaaggctg-ttgaaaggatgcattttctgatagacatta-----gaaatt----gataacacag-----aaacacatttactcaccatgtgcaattcgcag------------------------------------------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttcta--ttgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTATACTTGGAGCCTTGGCATGCTGATATTTTTGAGTTCCTTGATCTGAGAAAGAACCATGGGAAGgtaaaaatc--tcgacc---atcagtctttaattactttcacatataaaaactgaaagtgtct--gtcttttgaactcgacacttagttgactttatatatgcatac----------------------------------------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTATACTTGGAGCCTTGGCATGCTGATATTTTCGAGTTCCTTGATCTAAGAAAGAACCATGGGAAGgtaaaatc---tcgacc---attagtatttaattatttccatgtatgaaaaacagagtatctttgtcttttgaactccaacaataatttggctttatatatgctta---------------------------------------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgtt-attttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTGTACCTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGGAAAAACCATGGAAAGgtatgattg-atgggtctttaaaaaagtagca--attttggttcccattatttagttttgaccctagtttttagttcatgctagttaaagaatagt-tctattttattgat-atagccacatgttgttatttatgcag--------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGgtatgattggctgggctta----atggtgtggtaacaatgtactttgactgtcatcagtgagttgttttagcattatttgttcttattaccgtgtattggtgttatgtag-----------------------------------------------------------------------
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 6
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
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GTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGgtatgattggctgagctta-atggtggtggtaacaatgtactttg-actgtcatcaaggagtt--gttttagcat-tttttattcttatcactgtattggtgttattttttgtag------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714052|gb|FC064127.1|FC064127EST: GGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAG GAGGAGCATAGGGCTCGAGATCTATTTTATGCTCTTTGGGTACCTGATCTC
genomic: GGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctgg ... ttttttgcagGAGGAGCATAGGGCTCGAGATCTATTTTATGCTCTTTGGGTACCTGATCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGACATATTTGAGTTTCTAGATCTTAGGAAAAACCATGGAAAGgtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgcaggtgttgaactacaaataaccataatatctgttgttgttgtttttttttttttttttttgcag
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA