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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTGGACGTGCGCTCTTTAATGCTATCCCTCTTCTCCCACTAACTCGTGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcattgtttgtactattttcttgaacacacattatcatacttgtggaatggaaattttgatttttctttgacttcttttaacag

Basic information

species Vitis vinifera
transcript Vv07s0031g00230.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583741|gb|CB006436.1|CB006436
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
EST: gi|110356919|gb|EC920092.1|EC920092
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
EST: gi|110725160|gb|EE101552.1|EE101552
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
EST: gi|110357312|gb|EC920764.1|EC920764
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
EST: gi|110729059|gb|EE105241.1|EE105241
EST:     GGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGGA-ATCAAGTTTAATG                         ATA-ATAAGCATTC
genomic: GGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTG-ACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTC
EST: gi|71863118|gb|DT012173.1|DT012173
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
EST: gi|110719714|gb|EE095083.1|EE095083
EST:     TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATG                         ATATATACGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG
genomic: TGGCATCAAGTTCCCTCTCTTCTCAGTAACTCTTGACATCAAGTTTAATGgtaagatcat ... cttttaacagATATATATGCATTCATTCTTGGAAATTGCATTATACGGACTGTCGTAACTG