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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAAGTGGATAAGGGGACACCGGGACTTGCCTTTGAGACTTAACCAATGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggtctgcatttattgatttttaatttgttctgttttcttgtttagctaacctgaggttattttaggattagagattatttgcaaattagcttt...

Basic information

species Vitis vinifera
transcript Vv07s0005g02620.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 6
ATTCTAAGTGGATAAGGGGACACCGGGACTTGCCTTTGAGACTTAACCAATGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggtctgcatttattgatttttaatttgttctgttttcttgtttagctaacctgaggttattttaggattagagattatttgcaaattagcttt
| |||||||||||||||||||| || ||||||||||||| |||||| || |||||||| |||||  | |||||||||||| | || || ||||| || |||||||  |   |   ||| || |   |   ||  ||  |   | || | ||   |      || || | |      |  ||  | || |||| |  | | 
ACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTCAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGgtagtgagtagttttttttttcaccatgttttcctttggccatgttatataatgattagttggctagtgtttatacaatgaacaatttcaaacttacata

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G40930.1 (Glycine max), 5'ss of exon 6
ATTCTAAGTGGATAAGGGGACACCGGGACTTGCCTTTGAGACTTAACCAATGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggtctgcatttattgatttttaatttgttctgttttc--ttgtttagctaacctgaggttattttaggattagagattatttgcaaattagcttt
| |||||||||||||||||||| || ||||||||||||| |||||| || |||||||| |||||  | |||||||||||| | || || ||||| || |||||||  |   |   ||| ||  |||||  ||     |||||||  |||   |  | |  | ||| |   || |   | | | ||||      |  |  || 
ACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTAAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGgtagtgagtagtttttttttttttttttctttcaccttgttttcctttggccatgttatataaggattagttgg--ctggtgtttatacaatgaacaatttc

upper sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 5
ATTCTAAGTGGATAAGGGGACACCGGGACTTGCCTTTGAGACTTAACCAATGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggtctgcatttattgatttttaatttgttctgttttcttgtttagctaacctgaggttattttaggattagagattatttgcaaattagcttt-------------------------------------------------------------------------------
|    |||||||||||||| ||||| |||||||||||||  |||||||| |||||||| |||||| | |||||||||||| | ||||||||||||||  |||| |||  | | ||| || |  ||| || ||| |||||||   || |   | ||   |    || || | |   |||  ||| |||      ||  | |                                                                               
ACAGCAAGTGGATAAGGGGGCACCGTGACTTGCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCCATTTATCCGgtattttattat-catatactcctttctacttt-ttctgttca-ttatcatgttag--tactttttttcttgagctagtcattgtttctgctgtaaatattcggcttaacgtttggattgaaaccttcgacacagaaatttgcttgccacagcccactgcctaacctatttaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352787275|gb|FQ477895.1|FQ477895
EST:     TGGTGCAATGTTGTTCGATGGGAGTTCAGCCATCCTACCCCGTTTATAAG                         GAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTAC
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTAC
EST: gi|30306282|gb|CB983076.1|CB983076
EST:     TGGTGCAACGTTGTTCGGGGGGAGTTCAGCCATCCTACCCCATTTATAAG                         GAGTCGGGAATTTCTT-GGCAGGAGGGGCATACTGCTTTTGCTAAAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|294964991|gb|GW838794.1|GW838794
EST:     TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAG                         GAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|110712760|gb|EE088090.1|EE088090
EST:     TGGTGCAATGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCGTTTATAAA                         GAGTCGGGAATTTCTTTGGCAGGAAGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|29784140|gb|CB344515.2|CB344515
EST:     TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAG                         GAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|161708997|gb|FC058789.1|FC058789
EST:     TGGTGCAATGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCGTTTATAAG                         GAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|37190730|gb|CF610079.1|CF610079
EST:     TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCGTTTATAAG                         GAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|110713336|gb|EE089170.1|EE089170
EST:     TGGTGCAATGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCGTTTATAAG                         GAGTCAGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA
EST: gi|110712013|gb|EE089150.1|EE089150
EST:     TGGTGCAATGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCGTTTATAAG                         GAGTCGGGAATTTCTTTTGCAGGAGGGGCAAACTGCTTTTGCTACAAAGGA
genomic: TGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggt ... atggttgtagGAGTCGGGAATTTCTTTGGCAGGAGGGGCATACTGCTTTTGCTACAAAGGA