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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTCCCATGGTTCCGGTTGTCGTACTTTGTGCTCTGGAGCTGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaagcattgttcttaatcatcctctctgctctgagacttttgcttcaagactgaacttatcgtgtctctcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02170.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G01240.1 (Glycine max), 5'ss of exon 7
CCATTCCCATGGTTCCGGTTGTCGTACTTTGTGCTCTGGAGCTGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaag---------cattgttct--taatcatcctctctgctctgagacttttgcttcaagact----gaacttatcgtgtctctcag-----
|| || || |||||  |  | ||||| |||||||| |||||||||  |||  | ||||||||||||||||||||||| | ||| ||| |||||||||          ||| |  |  || |  |  | | |   || | |  |||  ||||  ||     | | || |  |   |||        
CCCTTTCCTTGGTTTAGACTCTCGTATTTTGTGCTGTGGAGCTGTGGCTACATAATTTTCCAATGGGTCATCCACGCCTTTGGTTTTACATGgtaagatgtaactgtattttcgtactattagtattttatcagctaaaagctttcattcatcacccataggatttcttcttcttcttctaatag

upper sequence: Vv07s0005g02170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G40780.1 (Glycine max), 5'ss of exon 6
CCATTCCCATGGTTCCGGTTGTCGTACTTTGTGCTCTGGAGCTGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgta-----agcattgttcttaatcatcc--tctctgctctgagacttttgcttcaagact--------gaacttatcgtgtctctcag----
||||| || |||||  |  | || || ||||| ||||||||||||  ||| || ||||| ||||||||||||||||| | ||| |||  ||||||     |  ||  ||| |     |||  | || ||    ||  || | || ||| | |        | |  | | ||   || ||     
CCATTTCCTTGGTTTAGAGTCTCCTATTTTGTTCTCTGGAGCTGTGGCTACGTCATTTTTCAATGGGTCATCCACGCCTTTGGTTTTAAATGgtacaataactatgtttccttcctttccattatcagccacaagctttgttctacaacattagttgtaagcaaatgttgttgttcccaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374265|gb|EC938934.1|EC938934
EST:     TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATG                         GTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
genomic: TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaagcattg ... tgtctctcagGTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
EST: gi|110411341|gb|EC977050.1|EC977050
EST:     TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATG                         GTGGCCATACCCTTTCCTGGAGCTTTCAACACCATGGGCGCCTCTATG
genomic: TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaagcattg ... tgtctctcagGTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
EST: gi|30135410|gb|CB920748.1|CB920748
EST:     TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATG                         GTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
genomic: TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaagcattg ... tgtctctcagGTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
EST: gi|110421152|gb|EC987442.1|EC987442
EST:     CGCTTGTGGGTTTTCATG                         GTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
genomic: CGCTTGTGGGTTTTCATGgtaagcattg ... tgtctctcagGTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
EST: gi|110732125|gb|EE107140.1|EE107140
EST:     TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATG                         GTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG
genomic: TGTATCTATGTTATTTTCCAATGGGTCATCCACGCTTGTGGGTTTTCATGgtaagcattg ... tgtctctcagGTGGCCATACCCTTTCCTCGAGCTTTCAACACAATGGGCGCCTCTATG