Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCGgtaagcattcttcacttaaatcacttaatgtacatgttcggttgcaaagaaaaagatcaaaagaagacgaagtaacattttctctctaatggtgattttattcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02120.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416576|gb|CF415330.1|CF415330
EST:     CTAACGGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG                         GCACTGCGGCCTTTTCTTGAAGGCTTACTTCTACGTGGGTTGGAACGGTTT
genomic: CTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCGgtaagcattc ... ttttattcagGCACTGCGGCCTTTTCTTGAAGGCTTACTTCTACGTGGGTTGGAACGGTTT
EST: gi|110700786|gb|EE077744.1|EE077744
EST:     CTAACGGTATCATATGAGATTCCTCANGTCTTGATCCCAGTGGCATCG                         GCACTGCGGCCTTTTCTTGAAGGCTTACTTCTACGTGGGTTGGAACGGTTT
genomic: CTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCGgtaagcattc ... ttttattcagGCACTGCGGCCTTTTCTTGAAGGCTTACTTCTACGTGGGTTGGAACGGTTT