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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAGATAACTTCATATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttccctccctttctgtgggttgtaacggctacttttcctgttttggtgcttaacaacaaaacatgacacag

Basic information

species Vitis vinifera
transcript Vv07s0005g00740.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586578|gb|DV222413.1|DV222413
EST:     ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAG                         GTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
EST: gi|161715260|gb|FC065809.1|FC065809
EST:     ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCA-GCCCAGTACACCCCAG                         GTGGGTTGCTGTTTCA-GATGAGTGACAGCA-CATGCAGTATGTGACCTC-
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTT-CAAGATGAGTGACAGCAACATGCAGTATGTGACCTCC
EST: gi|156739183|gb|EV243304.1|EV243304
EST:     ATGTTCTCTGATACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAG                         GTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
EST: gi|110687298|gb|EE064584.1|EE064584
EST:     ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAG                         GTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
EST: gi|71874084|gb|DT023139.1|DT023139
EST:     ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAG                         GTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
EST: gi|110701944|gb|EE080092.1|EE080092
EST:     ATGTTCTCTGATACCAAGAACTCCTTTCTCCCAAGCCCAGTACACCCCAG                         GTGGTTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA
genomic: ATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCCAGTACACCCCAGgtcctcttcc ... catgacacagGTGGGTTGCTGTTCAAGATGAGTGACAGCAACATGCAGTATGTGACCTCCA