Sequence
atgc intronic sequence ATGC exonic sequenceTATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatatatatctgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 5
TATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatatatatc-tgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag----------
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CATATTAACTAAAGTTGAAGATATAATCCCAAAGTGGAAGATAGTTCCCACAAAGGATGTCATCGATTCAGCCTTTAAAGACCCTGCTAAACGAGAGAGGgtga-ggtttatattgtaaattgtaattgagatgcttgcttaaatgacttaaagtcttgttgatttagtgctagggttaactaatgtgcctcttcctatgagggtcattgcag
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G39880.1 (Glycine max), 5'ss of exon 3
TATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatatatatctgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag
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--------------------------------------------------------------------------CCAGATATCCGGTGGTGAAGCCATACCCGGTGGTG---GTCAACATATTGACTAA-Agtggaagatataatcccaaagtgaaagatagttcacacaaag-----------------------------
upper sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G62860.1 (Arabidopsis thaliana), 5'ss of exon 6
TATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtg-atgatatatatctgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag
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TCTACTAACGAGAGTTGAAGATATTATACCAAAATGGAAGATAGTTCCTACAAAAGATGTTATCGATGCTGCCTTCAAGGATCCGGTCAAGCGCGAAGAGgtatattaatcgaatcagt----caacacataa--ctaaaaagtgtactaataaaaaacttggttcctaaaatgtag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423997|gb|EC990350.1|EC990350EST: CAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAG ATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCG
genomic: CAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatat ... taatgcgcagATAAGAAACAATAAGTTGATATACCAAGACAAGCCGAGGCTGAAGACAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATATTAACAAAAGTGGAAGAGATAATACCAAAGTGGAAGATAGTGCCCACAAAGGATGTAATAGATTCTGCATTCAAGGACCCTGTTAAGAGAGAAGAGgtgatgatatatatctgttttccaacttctagtcccatatatttctctcatgtaaacgtgggattctgaacagcattgctttctgtcgttaataatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA