Sequence
atgc intronic sequence ATGC exonic sequenceATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G451366_T02 (Zea mays), 5'ss of exon 6
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
||| || | | |||||||||||||||||||| || | ||||||| | || ||||| |||| || |||||||| || || ||||||||||| ||||||| |||| | |||| |||| | || || ||| || || | ||| | | || ||| ||| | ||
ATTTTCACGTTTGTATTCAAATCCTAAGACAAGGGGCAAGTACAATATTCTCTTTGGGTTAACATCTGGTGGACCCTACAATTACAATGGAACTAGCAAGgtaagtacc--catttgtgcgatttagcaactaggtccttcttt---gtgtcatctgtgtaagcaacttacagctgttttttaatcaacgatgcag-------------------------
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G021784_T01 (Zea mays), 5'ss of exon 6
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
||| || | || |||||||||||||||||||| || | ||||||| | || ||||| |||| || |||||||| || || ||||||||||| ||||||| |||| | |||| | |||| | || || | | | || || | ||| | | || ||| ||||| || |
ATTTTCACGTCTGTATTCAAATCCTAAGACAAGGGGCAAGTACAATATTCTCTTTGGGTTAACATCTGGTGGACCCTACAATTACAATGGAACTAGCAAGgtaagtacc--catttgtttgatttagcaactaggtcctttgtgattgtgtcatctgtgtaagcaacttacagctgttttttttaatgatgcag---------------------------
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G18710.1 (Glycine max), 5'ss of exon 6
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
|| ||||| | ||||| ||||| |||||||||||| |||||| | || ||||| |||||||| ||||| |||||||||||||||||||| |||||||| || | ||||| | | || ||| || || | || | | | || | | | | || || | | |||| | || | | ||||| | || | |||
GTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACGTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGgtgatatttcctgtttggaagttcatttatttg------ctgatagaactgta-acgcgcaatc----aaccttcccttttgttatggttttggt-tacataca-attctgcatttttcag
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 6
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
|| ||||| | ||||| ||||| ||||||||||| |||||| | || ||||| ||||| || ||||| |||||||||||||||||||| |||||||||| | ||||| | | || ||| || || | | | | || || | | | || || | || ||||||| || ||||| | || | |||
GTTTTCTCTCTTATATTCTAATCCAAAGACAAGAGGTCAATACAATCTGCTGTTTGGGCTAACTTCTGGTGGGCCTTATAACTACAATGGAACCCATAAGgtaagatttcctgtttggaagttcatttatttg------ctgatagaacttta-acacgtagtc---aaccttcccttttgttatgctttttgttacataca---attctgcatttttcag
upper sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
||| || | || || |||||||| ||||| ||||| | |||||||||||||||| |||||| || |||||||| || |||||| | ||||| || |||||| | | || || ||| |||| || | || | | | | || || | | | || | ||| ||| || || || |||||
ATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAGGGAAATACAATTTACTTTTTGCACTAACATCTGGTGGACCCTACAACTACGAAGGAACTCAAAAGgtactcgacctaacttattg-attctactaa-aaccatatccttcctgcttcttctgtttgg--tgcatttgtaaacttggttgtatccttcattaagc------atcatatcttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718905|gb|FC067348.1|FC067348EST: TTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAG TGGCTTCGAAGTTTTGACCAACGTTTGCGTGAGAGTATTGACTATGCAATC
genomic: TTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacct ... ctttgtgcagTGGCTTCGAAGTTTTGATCAACGTTTGCGTGAGAGTATTGACTATGCAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTCTCTACTTTATTCAAATCCTAAGACAAGAGGAAGGTACAATTTACTTTTTGGACTAACGTCGGGTGGACCTTATAACTACAATGGAACACATAAGgtaattacctccctttggtggattatacttttaattctccttttaaagttggatatacttaaactgaagattgccgttctttttcttgctttgttatatttttatattctactttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA