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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGGAGTGTTTGCCAAAGGATGGATCTAAGTGGGATCATGTGAGAAAAGGAATTTGCTGTATATGTTGTGACAGCCATATCGATTCTTTACTGTACAGgtaaaagtcataaaattttaagagctccatgaggcagataaaaccaaatatgtattgctgttgaagcacatcatctgacatcatttgtcctgtgtcttttcag

Basic information

species Vitis vinifera
transcript Vv06s0061g00860.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G08770.1 (Glycine max), 5'ss of exon 8
ACGAGGAGTGTTTGCCAAAGGATGGATCTAAGTGGGATCATGTGAGAAAAGGAATTTGCTGTATATGTTGTGACAGCCATATCGATTCTTTACTGTACAGgtaaaagtcataaa-attttaagagctccatgaggcagataaaaccaaatatgtattgctgttg--aagcacatcatctgacatcatttgtcctgtgtcttttcag
| ||       |  ||| | |||  |||||| |||||   ||||||||||||| ||||||||||||| ||||| ||| |||||||||||||  ||||||||||| |  |||||    ||  | || |   |     |  |  | |  ||  || ||||   |    |||   ||| |    | ||  |||                
ATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGgtaatatacataaccggttggacagatttgtagccaatttgcacctcaacctg-attgtaatcactaagagtatccttgtgcttctgttgcag-------------

upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G19750.1 (Glycine max), 5'ss of exon 8
ACGAGGAGTGTTTGCCAAAGGATGGATCTAAGTGGGATCATGTGAGAAAAGGAATTTGCTGTATATGTTGTGACAGCCATATCGATTCTTTACTGTACAGgtaaaagtcataaaattttaagagctccatgaggcagata-aaaccaaatatgtattgctgttgaagcacatcatctgacatcatttgtcctgtgtcttttcag
| ||       |  ||| | |||  |||||| |||||   ||| ||||| ||| ||||||| ||||| ||||| ||| |||||||||||||  ||||||||||| | ||||||             |  |  | |||||    | | | | || ||  |      |    |    || | |  ||   |    |    || |||
ATGATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTAAGAAAGGGACTTTGCTGCATATGCTGTGAAAGCAATATCGATTCTTTGTTGTACAGgtaatattcataa------------ccagtaggacagatttgtagccagtttgcatctcaacctgattgtaatcactaagagtatccttgtgcttctgttgcag

upper sequence: Vv06s0061g00860.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G39560.2 (Glycine max), 5'ss of exon 7
ACGAGGAGTGTTTGCCAAAGGATGGATCTAAGTGGGATCATGTGAGAAAAGGAATTTGCTGTATATGTTGTGACAGCCATATCGATTCTTTACTGTACAGgtaaaagtcataaaattttaagagctccatgaggcagataaaaccaaatatgtattgctgttgaagcacatcatctgacatcatttgtcctgtgtcttttcag
| || |    ||   || | |||  |||||| |||||   |||||| |||||| ||||||||||||| || || ||| |||| ||||||||  |||||||||   | |||       ||   |  ||    |    | |         ||  |  ||    | |   ||||  |   |  | ||||||| ||           
ATGACGGTGTTTCAACAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGgtgctattcagcctcactttgaaaatcagcaattttgttttgtttg--tacttgatgtcaatcacttacatattgctattttatttgtcttgcag--------