Sequence
atgc intronic sequence ATGC exonic sequenceATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttccttgtgattaatattctccgtaatgtatcggtcgttgagaattttggtatttagcttgtatgtttggaacacgtaccatgttataaactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os10g34750.2 (Oryza sativa), 5'ss of exon 6
ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttccttgtgattaatattctccgtaatgtatcggtcgttgagaattttggtatttagcttgtatgtttggaacacgtaccatgtta---taaactt--
||||| | | ||| ||||| ||||| ||||| |||||||| ||||| || | || ||||| ||||||||||||||||||| ||| ||||| ||||| | | |||| | || ||| || | | | ||| | ||| | || | ||| || | | ||| || | | |||
ATACATTGCCTGGAAGATGGATCAGTAGAGATCTATAGTCGTAATGCTGAGAGGAACACTGGGAAGTATCCTGATGTTGTTGATGCGGTTTCTAGgtatactgtcctatttttttgccactatcgtgatct-cagat--ttggcggtccactcatt--gtttccctctttttaaggcctttgatgctaagtttaccttac
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G071304_T01 (Zea mays), 5'ss of exon 6
ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttccttgtgattaatattctccgtaatgtatcggtcgttgagaattttggtatttagcttgtatgtttggaacacgt-accatgttataaactt-
||||| | || ||||||||| ||||| ||||| |||||||||||||| ||| |||| || ||||||||||| |||||||||| ||||||||| ||||| | ||| | | || | | || |||| || | | | | | | | || | || | || | | | |
ATACATTGCATGGAGGATGGTTCAGTAGAGATTTATAGTCGCAATGCTGAAAGAAACACCGGAAAGTATCCAGATGTTGTTGATGCAGTTTCTAGgtat--tctccattttataatttcacttaccaatgcatttctgaatctccaactgaagaagcactgggagcagttaatgctagttattatatccttgagtat
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G19880.1 (Glycine max), 5'ss of exon 6
ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttcct-tgtgattaatattctccgtaatgta--tcggtcgttgagaattttggtatttagcttgtatgtttggaacacgtacc-atgttataaactt
||||| ||| |||| |||| ||||||||||| || ||| | |||| ||||| |||||||| |||| |||||||||||||| ||| |||||||||||||| | | | | |||||| | | | | || ||| || || | ||| | || | ||| | | | | |||
ATACATTACCTGGAGAATGGCTCAGTTGAGATTTACAGTAGACATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGgtaaaaaaaaatgtattaggaatattatatgaggtctggttcagtctttctaggttg-gttatggacattccttaacaagaagctgcatttagagaacaaa---
upper sequence: Vv06s0061g00690.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G08600.1 (Glycine max), 5'ss of exon 6
ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttccttgtgattaatattctccgtaatgtatcggtcgttgagaattttggtatttagcttgtatgtttgg-----aacacgtaccatgttataaactt
||||| ||| |||| |||| ||||||||||| || ||| | ||||| ||||| |||||||| |||| |||||||||||||| || |||||||||||||| | | | | |||||| | | | || | | || || ||| || ||| || | || || | | ||| | |||
ATACATTACCTGGAGAATGGATCAGTTGAGATTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCCGCTGTTTCAAGgtaaaaaaactgtattaggaatattatatttgaggtctggttc----agtctttctgtgtttgttatggacacttccttaccaagaagctacatttagagaaca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857605|gb|DT006660.1|DT006660EST: GCTGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAG ATTAAAGAAGTCATCTGTGAGTTCGTTTGTTTTGGATTGCGAACTAGTTGC
genomic: GCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttc ... cagattgcagATTAAAGAAGTCATCTGTGAGTTCATTTGTTTTGGATTGCGAACTAGTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACACTACAAGGAGGATGGGTCAGTTGAGATATATAGTCGCAATGCCGAACGAAATACTGGAAAGTATCCTGATGTTGTTGTTGCAGTTTCAAGgtaaaatttccttgtgattaatattctccgtaatgtatcggtcgttgagaattttggtatttagcttgtatgtttggaacacgtaccatgttataaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacac