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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttttgtttcag

Basic information

species Vitis vinifera
transcript Vv06s0061g00040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g71320.1 (Oryza sativa), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtac-------agttcaatt-acttgcccttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttt-tgtttcag
|| || |||||||| ||||| |||||||||||||||||||||||||| ||  | || || ||     | |||| ||| |  |  ||||  ||||||||||||         ||  |||| | ||   || || ||||   ||||   ||  |  | | || | ||||        || |||||
GTAGTAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCAAGGACGCCATATGACATCTTGCTGGATGATGAAACACACAATCGCAATGATCAGgtagcaacctgggtaaaattcaattattctggtatctt--gtgttgtggttta-gactgaacactttgtactaccatgattcag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G068913_T01 (Zea mays), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgt-acagttcaatta---cttgcccttgtctcttcgatgttccagtgaacaaatcaagattttgaggcttttgtttcag
||||| |||||||||||||| |||||||||||||||||||||||||||||  |||| || ||     | |||| ||| |  |  ||||  ||||||||||| ||| ||    ||     ||   | |  |    |    |   || |  |   |   |       |   ||| | |||
GTTGTAAACATGGAATGGGGCAATTTCTGGTCATCACATTTGCCAAGAACTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacactttgtgtaaagtatgttatggaatagctgtaccttttgttagtattactgaacaaatctgacattgatccag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G467069_T02 (Zea mays), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgt--acagttcaattacttgcccttgtctcttcgatgttcca---gtgaacaaatcaagattttgaggcttttgtttcag
|| || |||||||||||||| | |||||||||||||||||||||||||||  |||| || ||     | |||| ||| |  |  || |  |||||||||||  |||        |  |    || | |  | | ||| ||    || |  |   |   |       |   ||| | |||
GTAGTAAACATGGAATGGGGCAGTTTCTGGTCATCACATTTGCCAAGAACTCCTTATGACATCTCCCTTGATGATGAGACACAAAACCGCAATGATCAGgtgaacaccctgtgcaaatcatgttatgtaatagttgtaccttttgttagtattgccgaacaaatttgacattgatgcag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcag
||||| || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||   ||| || ||||||||||||||||||||   ||||   | ||      |     | |    ||| || |||   ||   ||||||||    ||||| |  ||
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgcttgattcaagatgactcaaatcagattttgctaattttgatgtag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcag
||||| || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||   ||| || ||||||||||||||||||||   ||||  || ||  |   |     | |    |||  | |||   ||   ||||||||    ||||| |  ||
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcagattttggaaattttgatgtag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccagtgaaca-aatcaagattttgaggcttttgtttcag
|||||||| |||||||||||||| || |||||||| || || ||||||||||| || || |||||||| |||| ||| || ||||||||||||||||||||   ||||    | |||    || ||| | | || |  | |   ||  |  || ||||||  | ||| | | |||
GTTGTCAATATGGAATGGGGAAACTTTTGGTCATCTCACTTACCAAGAACATCATATGACATTGATTTGGATGCTGAGAGCCCTAATCCAAATGATCAGgtgaggttcggc-atttga---tgactcct-gttgcttgatttgtcatgactaaaattttggagatttgggtgcag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 6
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccagtgaaca-aatcaagattttgaggcttttgtttcag
|||||||| |||||||||||||| || ||||| || || || |||||||| || || || ||||| || |||| ||| || || |||||||||||||||||  ||||     |  ||    || ||| | | || |  | |   ||  |  || ||||||  | ||| | | |||
GTTGTCAATATGGAATGGGGAAACTTTTGGTCCTCTCACTTACCAAGAACGTCGTATGACATTGACTTGGATGCTGAGAGCCCAAATCCAAATGATCAGgtg-agtttctgcatctga---tgactcct-gttgcttgatttgtcatgactaaaattttggagatttgggtgcag

upper sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S414_10V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacag---ttcaattacttgcccttgtct----cttcgatgttccagt-gaacaaatcaagattttgaggcttttgttt-cag
||  | |||||||| ||||| ||||||||||||||||||||||| || || | |   |||      || |||   || |||   || |||   ||  | ||| |    |||||  |     |||   ||    |||   | |  |  | |||||||     || |   || ||||| || |||
GTGATAAACATGGAGTGGGGGAATTTCTGGTCATCACATTTGCCTAGGACTTATGTGGATGAATCCTTGGATAACGAGAGTTTGAACCCAGGAGAATACgtaaatcccttcaacgatgattcctaagctgcagctttattatctctctcgaacaaagttgaatgtgatgggttttgattgcag