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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTTGCAAATGGTTTGCGCAATTATTATTGGCTGTCGAATATCTGCATTCAAATTATGTTCTACACCGGGATCTTAAAgtatgtaaaaatgaatgcttatttgagatggttgttttatcactaaagactataagactcactttttagcattctcttggcag

Basic information

species Vitis vinifera
transcript Vv06s0009g00690.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G44200.1 (Arabidopsis thaliana), 5'ss of exon 6
AAACTTTGCAAATGGTTTGCGCAATTATTATTGGCTGTCGAATATCTGCATTCAAATTATGTTCTACACCGGGATCTTAAAgta-------tgtaaaaatgaatgcttatttgagatggttgttttatcactaaagactataagactcactttttagcattctcttggcag
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AAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAGTATCTGCATTCTAACTATGTTCTACATCGGGATCTAAAGgtaaaaactttggcgcaatgt-tagttgtttga-atcactgtgtcgtgcttagttttttatggacttatttgt--ggtttgtacttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862067|gb|DT011122.1|DT011122
EST:     TGGCTGTCGAATATCTGCATTCAAATTATGTTCTACACCGGGATCTTAAA                         TGTTCCAACATCTTTCTTACCAAAGATAAGGATGTCCGCCTTG
genomic: TGGCTGTCGAATATCTGCATTCAAATTATGTTCTACACCGGGATCTTAAAgtatgtaaaa ... ctcttggcagTGTTCCAACATCTTTCTTACCAAAGATAAGGATGTCCGCCTTG