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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattacccatctttgatatacatgtttttcatagtattttgtatgattatgcttgtgtaacaa...

Basic information

species Vitis vinifera
transcript Vv06s0004g08100.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 6
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattacccatctttgatatacatgtttttcatagtattttgtatgattatgct--tgtgtaacaa-
||||| |||||||| ||||| ||||| |||||| | |||||||| || || ||||| || || |||||||| ||  | |||||||  ||||||||||| ||| ||  ||  ||    | |  |   |     ||     ||   ||  |||  ||   |||  |       |||     |||||| | ||  ||  || |   
TTTCAGTTCAGATTCTGGCCAAATAACAACAGCAGAATGTATGTCTTGGAGGGGGTTACACCATGCATACAATCATTACAATTACAGGCTGGTGATACAGgt-taaatctccttggacatgat--atcacctgttctttttttacaattttattactgatgcctgattacatataagcaatgattttcctattgcataccttc

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 6
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattacccatctttgatatacatgtttttcatagtattttgtatgattatgcttgtgtaacaa------
||||| || || |||||||| |||||||||||| | |||||||| || || || || || || |||||||||||  ||||||||| |||||| ||||| |||| |   ||||| |||   |   |   | |  ||  |||   | || |   |   ||  | ||  | |  |  ||  |   | | || || |   || |      
TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAGTCTTTGCAATTACAAGCTGGCGATACAGgtaaaa--catcttatttccttggacatgatcataagcat---ctatttgcaa-gcacgcgcttcacttcttccttgattgaagtttgtttttaatactacctata

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 6
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtg-gtatacattacccatctttgatatacatgtttttcatagtattttgtatg-attatgcttgtgtaacaa-
||||| || || |||||||| |||||||||||| | |||||||| || || || || || || |||||||| ||  ||||||||| |||||| ||||| ||||  |  ||  | |   | | |  |   |   | || || | |   |  |||||  |  | | |||  || || |  ||||    |||   |   ||  |  
TTTCAGTTTAGGTTTTGGCCAAATAATAACAGCAGAATGTATGTCTTGGAGGGTGTTACACCATGCATACAATCATTGCAATTACAAGCTGGCGATACAGgtaattagcaatttagcatctatttgcaagcatgcattcacttct--ttcttgattgaagtttgtttt-taatactacgtatatggtatagctacttattatt

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 2
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattac----ccatctttgatatacatgttt-ttcatagtattttgtatgattatgcttgtgtaacaa
||||| |||||||||||||| ||||| |||||| |||||||||| || || || || ||||||||||||||| ||||||||||| | |||||||||||||||||   |||  | |           | |    ||   ||| |    | || ||  |  |  || ||| || |||  |  || ||| || |    |||||     
TTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGgtatgaatcaagttagggaaaaaaccttgcacatacctattgcattgcaattttgaacttgaatttttatttatatcaaattttat-atgaaatgtgtgtt----

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 8
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattac----ccatctttgatatacat---gtttttcatagtattttgtatgattatgcttgtgtaacaa
||||| |||||||||||||| ||||| |||||| |||||||||| || || || || || |||||||||||| ||||||||||| | |||||||||||||||||   |||    |           | |    ||   ||| |    | || ||  |  || ||   | |||   |   |||||  ||||  || | ||||      
TTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGgtatgaatcaagctagggaacaaaccttgcacatacctattgcattacaattttgaacttaaattttgatttatgtcaaattttacatgaa-atacgtgtg------

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G38490.1 (Glycine max), 5'ss of exon 3
---------TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattctttctcagtgggtggtatacattacccatctttgatatacat-gtttttcatag-tattttgtatgattatgcttgtgtaacaa
         ||||| |||||||||||||| ||||| || ||  |||||||||| || || || |||||||||||||||||| |||||||||||   |||||||||| |||||||        ||| | |  | |    ||  | || |||||     ||| |||  ||| ||  | |||||  |  | ||   |  ||  | |  |     
GACTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAGGGAGTAACCCCTTGCATACAGGCCATGCAATTAAATGCTGgtgatattggtata--------catccatcttgaaaatgttatctaaattacttgagttttatactcatagtcatacataggcagatcgttatagaattttagaattg---

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G40280.1 (Glycine max), 5'ss of exon 5
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatat-ttcatctcattctttctcagtgggtggtatacattac-ccatctttgatatacatgtttttcatagtat--tttgtatgattatgcttgtgtaacaa
||||| |||||||||||||| ||||| || ||  | |||||||| || || || |||||||||||||| ||| |||||||||||   ||||||||||||||||||  | |||||      |     |  |    ||   ||| |   ||| ||  |  | || | |||  || | |  ||| | |||  ||| || | |||   
TTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGAATGTATGTATTGGAGGGAGTAACCCCTTGCATGCAGGCCATGCAATTAAATGCTGGTGATACTGgtatacatccatcttggcaatgaattgatgcacatacttatttcattatcatttgttaaaatttatttagtattctgatttttgtgaaaatg-ttatctaa---

upper sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTCAATTCAGATTTTGGCCCAATAATAACAGCCGGATGTATGTTTTAGAAGGGGTAACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGgtatatttcatctcattc-tttctcagt--gggtggtatacattacccatctttgatatacatgtttttcatagtattttgtatgattatgcttgtgtaacaa------------------
|| || ||||||| |||||||||||| || ||  | ||||||||||||||||| || || || |||||||||||||||    |||  ||||||||||| ||||  ||| || |  ||| | ||| ||     |    |  ||||  |    ||| | ||  |  |||     |  ||||| ||  | |||  |||  |  |                    
TTCCAGTTCAGATATTGGCCCAATAACAATAGTAGAATGTATGTTTTAGAAGGTGTCACTCCATGCATACAGTCCATGATGCTACAGGCTGGTGATACAGgtacttttaatatagttcatgtcttagctaaagcttcaagcatttgctggttttaacatcaaattttcatgaaccattttctaaaactattgttggttttctgtgtttttcacctctacag