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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCTTTCTCCTCCTGTTCATCATCCCAAGCTTCGTTTCCGTGTTTGAGCACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaattagttatattttcctgaagtttggttagcatttctagaccaccgtcctaatactgaaggttccatactatgatatgagcctgctagtgtttt...

Basic information

species Vitis vinifera
transcript Vv06s0004g07920.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550373|gb|CF518591.1|CF518591
EST:     CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAG                         ATGATTTGTTTGATGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
genomic: CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaatta ... cttgttgcagATGATTTGTTTGACGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
EST: gi|30130681|gb|CB916020.1|CB916020
EST:     CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCANAG                         ATGATTTGTTTGATGATACCAGCTCTGANAGTTCTGCACACTCTGGAAAAT
genomic: CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaatta ... cttgttgcagATGATTTGTTTGACGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
EST: gi|37184233|gb|CF603587.1|CF603587
EST:     CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAG                         ATGATTTGTTTGATGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
genomic: CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaatta ... cttgttgcagATGATTTGTTTGACGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
EST: gi|30136949|gb|CB922287.1|CB922287
EST:     CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAG                         ATGATTTGTTTGATGATACCAGCTCT
genomic: CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaatta ... cttgttgcagATGATTTGTTTGACGATACCAGCTCT
EST: gi|37184219|gb|CF603573.1|CF603573
EST:     CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAG                         ATGATTTGTTTGATGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT
genomic: CACTTCTCACAGGTTGGACACAATGGCTCAAGGTGGTGATTGGCTCAAAGgtatcaatta ... cttgttgcagATGATTTGTTTGACGATACCAGCTCTGAAAGTTCTGCACACTCTGGAAAAT