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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttattcttttgtgtttccag

Basic information

species Vitis vinifera
transcript Vv06s0004g06040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G38930.1 (Glycine max), 5'ss of exon 7
TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttca-ctttcttctaacatttttcttattcttttgtgtttccag
  || |  ||||||||| ||| | ||| |  ||||||||||||||| ||||  |||| || ||||| ||||||||||||||||||||||||||||||||||||   ||    |   |    | |    | |       |  ||||  | ||    || |  | ||| |||  ||||     |||||  |  |||
CTTAGCAACAGCAAAAAACCCCTCAATAGGTTCTGCTTGGCTTACTTTAGCTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctatttttagcca--tgtaaaaacattttttttttgttagaagtcttctgtctctaatataatattcatctt----ctttgttatcacag

upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G36980.1 (Glycine max), 5'ss of exon 6
TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacatttttcttat-tcttttgtgtttccag
  || |  |||| |||| |||    ||||  ||||||||||||||| ||||  |||| || ||||| ||||||||||||||||||||||||||||||||||||   ||   ||   |    | |    |||       |  | |  |    ||   | | ||||| ||  |  | || |  |||||  |  |||
CTTAGCAACAGCTAAAAACCCCGCGATTGGTTCTGCTTGGCTTACTTTAGCTTTTGGCCTGAAATCCTTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgtttctattttcagtca--tgtaaaaacaatttattttttttggttagaagtcttctgcctctaatataatgttcatattctttgttatcacag

upper sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G46980.3 (Arabidopsis thaliana), 5'ss of exon 6
TCTAACTGCAGCAAAAAGCCCATTAATTGCATCTGCTTGGCTTACTCTAGCCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatacccacaaaaccctgagttaaatcagaacctagtagagatttttcactttcttctaacattt-ttcttattcttttgtgtttccag
||||||  | ||||||   || ||| | ||||| || ||||||| | ||||||||||||||||||||||||| || |  || |||||| | || ||||||||      |||||  |     ||| | | | |  |||| | || | ||  |  | | |||| |||||||| |||  | |  |||  |       
TCTAACGACGGCAAAACAACCTTTAGTGGCATCAGCCTGGCTTAGTTTAGCCGTTGGGCTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGgt------accca--agcgtgtgattcatacct-aacccaatacaaatgatg-agtatctt-taacatttattcccacttgtttcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720682|gb|FC070620.1|FC070620
EST:     CCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAG                         GAGATTGCACCACAGTATTCTGGTGTTCTACATG
genomic: CCGTTGGGCTTAAATCATTCAGTCACTCTGGTTTTCTTGTGAACCTTCAGgttggcatac ... gtgtttccagGAGATTGCACCACAGTATTCTGGTGTTCTACATG