Sequence
atgc intronic sequence ATGC exonic sequenceGTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctccattccctctactaattttcattggtggtgaagcatgcacagattttcttgacattctgtggaaactctttgctagagaaattaagttagga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G14240.1 (Glycine max), 5'ss of exon 6
GTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctccattccctctactaattttcattggtggtgaagcatgcacagattttcttgacattctgtggaa-actctttgctagagaaattaagttagga
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GAAGGATCACTGCTGAAAGTGTAGTATACAGTTTTGGCACCCTATTGCTTGATCTGTTGAGTGGAAAGCATATCCCACCCAGTCATgtacactccctccttcccatttattgtctttcattttaatttaaggtgacattgtgttcagtgaatctgacctgtacaatgttggcactttacagttgaa-
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G06200.1 (Glycine max), 5'ss of exon 6
GTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctc-cattccctctacta-attttcatt---ggtggtgaagcatgcacagattttcttgac-attctgtggaaactctttgctagagaaattaagttagga--------------------------------------------------------------------------------------
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GAAGGATCACCCCTGAAAGTGTAGTCTACAGTTTTGGCACCCTATTGCTTGGTCTTCTGAGTGGAAAGCATATCCCACCCAGTCATgtacactctcatttattgtctttcattttaatttaaggtggcattgtgttcagtgaatctttgacctgtacaatgttggcactttac-agttgaattttactagatttgcaaaaacatggtttggcttaaaatgatcatatcgtcatataagtatataaaatcataaactaataggtaagataatcccacag
upper sequence: Vv06s0004g05810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G41600.1 (Glycine max), 5'ss of exon 6
GTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctccattccctctactaattttcattggtggtgaagcatgcacagattttcttgac-attctgtggaaactctttgctagagaaattaagttagga---
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GAAGAATCACCCGAGAAAGTGTAATATACAGTTTTGGCACACTCTTGCTTGATCTTCTGAGTGGCAAGCATATTCCACCCAGTCATgtatactcccagctttctact--ttctctttgat--ttaattcaatgttattttgttcaatgaatatttgattcgtagaattttggtaacttgtgtctgaatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299737|gb|CB976531.1|CB976531EST: GCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCAT GCACTCGACCTGA
genomic: GCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctcca ... atttctgcagGCACTTGACCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGAGTGACTGCTGAAAGTGTAGTTTACAGCTTTGGCACACTATTGCTTGATCTTCTCAGTGGAAAACATATCCCCCCAAGCCATgtaagctccattccctctactaattttcattggtggtgaagcatgcacagattttcttgacattctgtggaaactctttgctagagaaattaagttagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaa