Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgattgttttgattaaagtatcatactaaggccttgtctcatctcatgctatttggaagatgtgtaacaagactacgtgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g16700.4 (Oryza sativa), 5'ss of exon 5
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtat------attgatatttcattctgattgttttgattaaagtatcatactaaggccttgtctca----tctcatgctatttggaagatgtgta-acaagactacgtgaa------------
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TAAAACTTAGGATCAAGTCTTTCAAGGTGCCTGAACTTCTAATTGAGATCCCAGAAACTGCGACTGTTGGTTCACTGAAGgtacggaaaaagagacattttgctcctgtt-ttctcattaattgatcagcacaaagagatgttgcaagaatttcaccttttgtcgatgatgtttccgtgttttaatatgtatttataatgcag
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G04200.1 (Glycine max), 5'ss of exon 6
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgattgttttgattaaagt-----atcatactaaggcctt--------gtctcatctcatgctatttggaagatgtgtaacaagactacgtgaa--------------------------------------------------------------------
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TGAAGCTTAGGATCAAATCATTCAGAGTGCCTGAGCTTTTTATCGAGATTCCAGAAACTGCAACCGTCGGGTCCCTGAAGgtatgataaaatcctattctg-ccatacacacaaaaatcctctaccatattcagatgttaatgatgagtggcatctgcttctgtatgtgtgttct-tggcatg-ctgcatcatttggtgtgatcattattgcatttttcacataagttgggctgcagctcttacaacaatttgctctgcag
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G06680.1 (Glycine max), 5'ss of exon 5
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgat-tgttttgattaaagtatcatactaaggccttgtctcatctcatgctatttggaagatgtgtaa--caagactacgtgaa------------------------------------------------------------------------------
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TGAATCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagttttatatttttccatccacataccatcctaccttttttagatgtt--cacaaggaatgccatttgtgtaatttataagctgcatttacattttaataatccattgcatttgcatgtatcttccatcacaagttcagttgagctgtattttttacaacattttggtctgcag
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G14760.1 (Glycine max), 5'ss of exon 6
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgattgttttgattaaagtatcatactaaggcc---ttgtctcatctcatgctatttggaagatgtgtaa--caagactacgtgaa-----------------------------------------------------------------------------
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TGAATCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATAGAGGTTCCAGAAACTGCAACAATTGGGTCCTTGAAGgtataatagttttatattttg-ccattcacataccatcttcttactatttttagatgttcacgaggaatgtcatttgtgtaatttataagttgcatttacatttcaataatccattgcatttgcatgtatcttctactcaagttcagttgggctgtattttttacaacattttggtctgcag
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G41210.1 (Glycine max), 5'ss of exon 8
--------------------TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctg--attgttttgattaaagtatc--atactaaggcctt--------gtctcatctcatgctat-ttggaagatgtgtaacaagactacgtgaa------------------------------------------------
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GATGTCTTTCTTTTATCCAGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTTATCGAGATTCCAGAAACTGCAACCGTTGGGTCCTTGAAGgtatgataaaattctattctgccatacacacaagcatcctctcccatattcagatgttaatgatgggtggcgtctgtttctgtatctgtgagttcgtggcatg-ctgcatcatgtggtgtgatcattattgcatatttcacataagtcgtttgctctgcag
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G59430.2 (Arabidopsis thaliana), 5'ss of exon 6
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgta-tattg-atatttcattctgattgttttgattaaagtatcatactaaggccttgtctcatctcatgctatttggaagatgtgtaacaagactacgtgaa
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TGAAACTACGGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTGGCTCATTGAAGgtaacattacacagctcttcctttcgcctcctattaag-----aaagtaagttcttatg--gtcctttggcttctgcag-----------------------
upper sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G46590.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgattgttttgattaaagt-atcatactaaggccttgtctcatctcatgctatttggaagatgtgtaacaagactacgtgaa
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TGAAGCTGCGGATCAAGTCTTTTAGGGTGCCTGAGCTTTTCGTAGAGATTCCAGAAACTGCTACTGTTGGCTCCTTGAAGgtgtaataacaa---aacctagttgtgctgaaaatcctgatcaagaagaacttatatttgtatttttgtaatgtcggggttgtcag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30302294|gb|CB979088.1|CB979088EST: CAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAG AGGACAGTTATGGAGGCAGTGACTGCTATACTTGGAGGTGGACTACGTGTC
genomic: CAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgat ... tcctctgtagAGGACAGTTATGGAGGCAGTGACTGCTATACTTGGAGGTGGACTACGTGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGCTTAGGATCAAGTCTTTCAGGGTGCCAGAGCTCTTTATAGAGATTCCAGAAACTGCAACTGTTGGTTCCCTCAAGgtatattgatatttcattctgattgttttgattaaagtatcatactaaggccttgtctcatctcatgctatttggaagatgtgtaacaagactacgtgaa
- - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga