1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAGgttagaatcatgtccctgtttcccgttacttttcacctttctttcttgtatgagaaatctttctctagagtcagatggaggtccaatgaaatggttcttt...
species | Vitis vinifera |
transcript | Vv06s0004g04930.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAG AACACGTGTTACTCTAAAAAGAGATGGTGTTGTCCTAGATTTGGTGCCACCEST: gi|30133371|gb|CB918710.1|CB918710
genomic: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAGgttagaatca ... tcatttgcagAACACGTGTTACTCTAAAAAGAGATGGTGTTGTCCTAGATTTGGTGCCACC
EST: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAG AACACGTGTTACTCTEST: gi|30252454|gb|CB970005.1|CB970005
genomic: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAGgttagaatca ... tcatttgcagAACACGTGTTACTCT
EST: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAG AACACGTGTTACTCTAAAAAGAGATGGTGTTGTCCTAGATTTGGTGCCACC
genomic: TTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAGgttagaatca ... tcatttgcagAACACGTGTTACTCTAAAAAGAGATGGTGTTGTCCTAGATTTGGTGCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGGGCATGCTGAAAATGAGCATTTCACTTATGAAGTTACATCAAAATTAAAAACCAAATTTTTAGGGAACTTCCTGGATGTCTATCCTGTTGGAAGgttagaatcatgtccctgtttcccgttacttttcacctttctttcttgtatgagaaatctttctctagagtcagatggaggtccaatgaaatggttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa