Sequence
atgc intronic sequence ATGC exonic sequenceCAGTAAATAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACCCCTTTGCTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttctcgctcttttagcttgttttgtgtttgttggagctggaaatagataaaaaaaatttccttgttataggttggtatagaggaatctactcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G40080.2 (Glycine max), 5'ss of exon 7
CAGTAAATAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACCCCTTTGCTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttctcgctcttttagcttgttttgtgttt---gttggagctggaaatagataaaaaaaatttccttgttataggttggtatagaggaatctactcct-
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CAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGgtttgtttctc-tgctctgagcacattttgtcttttagtttcaaagtagaaata--ctaaaacgttttctgtaagataaag-ggtgctttttactgtaatcttc
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 6
CAGTAAATAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACCCCTTTGCTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttctc-gctcttt---tagcttgttttgtgtttgttggagctggaaatagataaaaaaaatttccttgttataggttggtatagaggaatctactcct-
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CAGTAAACAGATGTTTTGAGAAGAATCCGAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGgtttgtttctctgctctgtgcacagtttgtcttttagtt--tcaaaatagaaata--ctaaaacattttctgtaagataaag-ggtgcttttttctgtaatcttc
upper sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 6
CAGTAAATAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACCCCTTTGCTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttctcgctcttttagcttgttttgtgtttgttggagctggaaatagataaaaaaaatttccttgttataggttggtatagag---gaatctactcct-
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CAATAGACAGATGTTTTGAAAAGAATGCAAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCATTCATTTAGCTGgtttgtctctaatt--ttcaactc--tttaaatcaactgccttgtacattctttccctgctatttattttctgaataataatgtggagattgaggctactgatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699831|gb|EE077188.1|EE077188EST: CTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTG GAACCCAGCTACATTTCTTCATGCATACACCTGTCTTCCCCTTGCTTATGC
genomic: CTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttct ... gtggtttcagGAACCCAGCTACATTTCTTCATGCATACACCTGTCTTCCCCTTGCTTATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTAAATAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACCCCTTTGCTCGGAGGAACAGATGTTGTCTTCTCTTCTCTCATTCATTCTTTCAATTGgtttgtttctcgctcttttagcttgttttgtgtttgttggagctggaaatagataaaaaaaatttccttgttataggttggtatagaggaatctactcct
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaggaa