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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCATAGACTGGACTCTTTGTTCATCCACACACATGGATCCAATGACATCTGATGTTATTGCACCTTCACCTTGGACAATCTTTGGTTGTCAAAATGgttagtggtaaaatagtgatctgctttttgacatggctgaagttccatgtttaaaattatgggtggtatacag

Basic information

species Vitis vinifera
transcript Vv06s0004g02720.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G069976_T01 (Zea mays), 5'ss of exon 7
AACTCCATAGACTGGACTCTTTGTTCATCCACACACATGGATCCAATGACATCTGATGTTATTGCACCTTCACCTTGGACAATCTTTGGTTGTCAAAATGgttagtggtaaaatagtgatctgctttttgacatggctgaagttccatgtttaaaatta--tgggtggtatacag
          | |||||| | | ||||||  | || |  ||||||||| |||||||||| ||||||||||| || |||||||| ||||| |||  ||| ||| | ||||| ||     || |  || ||  |||   |||| || | || | |||   |  |   | | ||  ||
----------ATTGGACTTTATTTTCATCTGCTCATAACGATCCAATGGCATCTGATGTCATTGCACCTTCTCCATGGACAATATTTGGCTGTACAAACGgt-aatggtataa-----atttctttgtttccatcaatgaaatttc-tgctaaaatccaatttacttgcatttag

upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 6
AACTCCATAGACTGGACTCTTTGTTCATCCACACACATGGATCCAATGACATCTGATGTTATTGCACCTTCACCTTGGACAATCTTTGGTTGTCAAAATGgttagtggtaaaatagtgatctgctttttgacatggctgaagttccatg--------tttaaaattatgggtg-gta-tacag-----------------------------------------
   ||||      | | ||        ||   | ||  |  ||      |  ||||||||||||| |||||||| |||||||||||||| || ||||||||| |  |   |  |     | |||| |||||  | |     | |   ||        |||||||||     |  ||| || ||                                         
TCTTCCAGTAGTAGAAGTCACCCAAATTCTGTAGACTGGACTCTTTCTTCTGCTGATGTTATTGCCCCTTCACCATGGACAATCTTTGGCTGCCAAAATGgtaaaagtgtatttccatttttgctgtttga-gttgtcattgctttgtgaaagttgttttaaaattgcacttaagtactagagctggctaaaaatgttactaatgtttttatggtgtaacacag

upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G29750.1 (Glycine max), 5'ss of exon 6
AACTCCATAGACTGGACTCTTTGTTCATCCACACACATGGATCCAATGACATCTGATGTTATTGCACCTTCACCTTGGACAATCTTTGGTTGTCAAAATGgttagtggtaaaatagtgatctgctttttgacatggctgaagttccatg--------tttaaaattatgggtg-gta-tacag-----------------------------------------
   || |        | ||        ||   | ||  |  ||      |  ||||||||||||| |||||||| |||||||||||||| || ||||||||| | || | |  |     |||||| |||||  | |     |||   ||        |||||||||     |  ||| || ||                                         
TCTTCTAGTAGTATAAGTCACCCAAATTCTGTAGACTGGACTCTTTCTTCTGCTGATGTTATTGCCCCTTCACCATGGACAATCTTTGGCTGCCAAAATGgtaaatgtttatttccatttctgctgtttga-gttgtcattgttttgtgaaagttgttttaaaatttcacttaagtactagagctggataaaaatgttactaatgtttttatggtgtaatgcag