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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAGgtcatccacatgagccgttccataattttcatttatttattttgattgtttctggatattgagtttcagatgcttatgttttgtggcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02700.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184080|gb|CF603434.1|CF603434
EST:     TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG                         TTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAACAAGT
genomic: TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAGgtcatccaca ... tttgtggcagTTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAACAAGT
EST: gi|161717256|gb|FC067262.1|FC067262
EST:     TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG                         TTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAAACA-G
genomic: TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAGgtcatccaca ... tttgtggcagTTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAA-CAAG
EST: gi|110687082|gb|EE064179.1|EE064179
EST:     TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG                         TTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAACAAGT
genomic: TTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAGgtcatccaca ... tttgtggcagTTTTCTGAGGATTTCCAAATTTTGCTTTTTCACTATGATGGTCGAACAAGT