1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATCAAGATGGGAGCCTACTGATTACTTGTATGCCTTCTCGTAACGAGGTCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctatcacagtcatcttttcttataaaatatgttggtttgctgaatgtcttacagttctggacatttgcttcctgtgagtaagaatgtaataagc...
species | Vitis vinifera |
transcript | Vv06s0004g02660.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCACTCAACTGACTGTGATTGGAGAGTGGTCAACCCGATGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTEST: gi|110726802|gb|EE102900.1|EE102900
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCT
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAAATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|37185470|gb|CF604823.1|CF604823
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|28970321|gb|CB349354.1|CB349354
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|110428655|gb|EC995132.1|EC995132
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|32459062|gb|CD800236.1|CD800236
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACCGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|30129190|gb|CB914529.1|CB914529
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|351026098|gb|FQ428110.1|FQ428110
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATCGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGGEST: gi|32457906|gb|CD799080.1|CD799080
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
EST: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAG GCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
genomic: TCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctat ... tattgaacagGCAATGCAGATCTGTCTCGAAGCTTGCTCAAAGCTTGCCAAGATCATAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCAAGATGGGAGCCTACTGATTACTTGTATGCCTTCTCGTAACGAGGTCACTCAACTGACTGTCAATGGAGAGTGGTCAACCCCAAGGGTTCATGAGgtaaggctatcacagtcatcttttcttataaaatatgttggtttgctgaatgtcttacagttctggacatttgcttcctgtgagtaagaatgtaataagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaagaa