Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaaccactgactgcattgaatttaaaaagaactatgaagaggttgattactgcccttttagacaatatgggatatatttacactaaaatatttgttatggttttcaaacag

Basic information

species Vitis vinifera
transcript Vv06s0004g02330.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G09890.1 (Glycine max), 5'ss of exon 6
TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaaccactgactgcattgaatttaaaaagaactatgaagaggttgattactgcccttttagacaatatgggatatatttacactaaaatatttgttatggttttcaaacag
||| ||||||||| |  || ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || |||||||||||   |  | ||    ||| |       | | |     || ||| || |  ||   |  || | |  ||  | |    | |  | |  |                            
TGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAACTTGGACTAGTTGGTGATGGTCCAAATAGCTATCAGgtttgttgatcagcagctgaacccg--ctgacagttgata-gaaaagctcaatagattaccatgttcactgttttttttcttctgatgcag--------------------------

upper sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G02200.1 (Glycine max), 5'ss of exon 6
TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaacc----actgactgcattgaatttaaa---aagaactatgaaga---ggttgattactgcccttttagacaatatgggatatatttacactaaaatatttgttatggttttcaaacag
||| ||||||||| |  || ||||||||||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| || || |||||||||||   |  | |     ||||   |  |||   |  |   || | ||   ||||      || | ||||   |||   |  ||   |                                         
TGAGTCTGTGGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAGCTTGGACTAGTTGGTGATGGCCCAAATAGCTATCAGgtttgttgatctgcagctgaactcgctgacagtggatagaaaagctcaaaagactataatgttcactgttttttcttatgatgcag-----------------------------------------

upper sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G04590.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgta--attaaaccactgactgcattgaatttaaaaagaactatgaagaggttgattactgcccttttagacaatatgggatatatttacactaaaatatttgttatggttttcaaacag
 || ||||| || ||  | ||||| || || || || || ||||| ||||| |||||||| || || || || ||||| ||||||||||||||||||||||||   ||  | |||   ||    | | |    |    ||  |  ||  ||     |     ||  ||  |    | |       ||   |                            
CGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTGTGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttggagcacaagctcttgttactagtgatgagacagtatagtagtaagcaagcaggctaatattctgagttgttgtcggttgtgcag--------------------------

upper sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S47_171V6.2 (Physcomitrella patens), 5'ss of exon 4
TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaaccactgactgcattgaatttaaaaagaactatgaagaggt---tgattactgcccttttagacaatatgggatatatttacactaaaatatt-tgttatggttttcaaacag---
 || ||  ||||  ||||  | ||||||||||||||||||||||| || || |||||||| || |||||| | || || ||||| ||||||||||| ||||||  |||    |    |  |   || |||       ||    ||   |   ||  |  |     | | | || | | |  ||    |  | |    |  |   ||   ||||||   | |   
AGAGTCCCTGGTGGTTCGCATTACTGGCTGCCCTAATGGTTGTGCAAGGCCGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgta--taatttccaactttgacaaaaattattgttgccttaacagctatatttgcatgataatgctatggccacttttgagtacgacttgaatggtttggtgcatttctgttttctctctgtag

upper sequence: Vv06s0004g02330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ27223 (Selaginella moellendorffii), 5'ss of exon 5
TGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTAATGGTTGTGCGAGACCTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaaccactgactgcattgaatttaaaaagaactatgaagaggttgattactgcccttttagacaatatgggatatatttacactaaaatatttgttatggttttcaaacag
 || ||  ||||  | || || || || || ||||||||||||||||| || |||||||| ||||||||||| ||||| |||||  | || || ||||||||||||   |    |      || |||||| |      ||||   | | |                                                                   
GGATTCGATGGTGGTGCGAGTCACCGGGTGTCCTAATGGTTGTGCGAGGCCATACATGGCAGAACTTGGACTGGTCGGAGATGGAGCAAATAGTTATCAGgtaatttt-ctgtggtgctttttcaatttacacgt--ttatgtcaatggtag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371676|gb|EC935796.1|EC935796
EST:     CTTACATGGCCGAACTTGGACTTGTTGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|110380705|gb|EC945992.1|EC945992
EST:     CTTACATGGCCGAACTTGGACTTGTTGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|161716240|gb|FC066503.1|FC066503
EST:     CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|110381798|gb|EC935409.1|EC935409
EST:     CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|30255100|gb|CB971547.1|CB971547
EST:     CTTACATGGCCGAACTTGGACTTGTTGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|30255485|gb|CB971617.1|CB971617
EST:     CTTACATGGCCGAACTTGGACTTGTTGGTGATGGTCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: CTTACATGGCCGAACTTGGACTTGTCGGTGATGGTCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
EST: gi|45771526|gb|CN007378.1|CN007378
EST:     TCCCAACAGCTATCAG                         ATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG
genomic: TCCCAACAGCTATCAGgtaattaaac ... tttcaaacagATCTGGCTCGGGGGAACACCCAATCAAACCTCATTGGCGAGAACCTTCATG