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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatag

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 6
TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttac-----ttcctattgcagctcaaaagctaaattacagtggcatc--accccta--tttgtcttacactat-tggcaaatt-ctcatggttttcacatt--tgtatgat------cactatag
|||| ||||| | ||| |||||| |||| || || |||||||||||||| |||||    |||||| |||||||||| ||||| ||||||||||| ||||| ||  |     |  || ||  |     |  | |   |  | |||   |   |   | |  | ||||  | | ||| |   |  || ||  |   | |     |  |||||| |        ||  ||
TGGCTGGAGATGCAACCAACATAGTTTTGGATCCAATATTTATGTTTGTCTTCCAGTATGGTGTCAGTGGTGCAGCAATTGCTCATGTTATATCACAgtatgtagcacaattctctcttataatatcattgttttttacccgtgaagttggatgacaaactatgtccaaaagtatataatacctttcttctacctcttgtgatagtgtatggtggaaaattctgcag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G41460.1 (Glycine max), 5'ss of exon 6
TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatag
|||||||||| ||||| ||||||    |||| ||  |||| |||||||| ||||   |||||||| ||||||||||||| |||||||||||||||||||| ||| || |  | | ||  |    |     ||            | |   ||||  |||   ||  |    |       |     | |  ||   || | |  | |||
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgtt-ctgcaaagtacatttatgcacaactatcttttccatggtatcttaattttccttttgcttcttttgaccctaattatcccttattttcaaatcaactgtgtag

upper sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 6
TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatag
|||||||||| ||||| ||||||    |||| ||  |||| |||||||| ||||   |||||||| ||||||||||||| |||||||||||||||||||| ||| ||    | | ||  |    ||    ||            | |   ||||  |||   ||  |    |   |         |    ||   || | |    |||
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgtt-ctgtgaagtacatttatgcagaactatcttttccatggtatcttaattttccttttgcttcttttgaccccagtcatcccttgttttcaaatcaactgcgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699707|gb|EE076951.1|EE076951
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|294967324|gb|GW836678.1|GW836678
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTTATCCTCTTTTGGAGATTAAGGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|294965646|gb|GW837245.1|GW837245
EST:     GTTTTCCATATGGGTATCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|30300493|gb|CB977287.1|CB977287
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCT                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT
EST: gi|30301245|gb|CB978039.1|CB978039
EST:     GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA                         GTACATTATTTCTGTAATCCTTTTTTGGAAATTATTGCAACAAGTCGAACT
genomic: GTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttact ... atcactatagGTACATTATTTCTGTAATCCTTTTTTGGAAATTAATGCAACAAGTCGAACT