Sequence
atgc intronic sequence ATGC exonic sequenceTCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGgtaagctacagattagcgccatcatattgaattccgattatttacacattcttatcctcttcccaaaaaaattttaacatattttttattttattttatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00950.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g66890.3 (Oryza sativa), 5'ss of exon 5
TCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGgtaagc--tacagattagcgc-catcatattgaattccgattatttacacattcttatcctcttcccaaaaaaattttaacatattttttattttattttatt--------------------------------------------------------
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TGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGgtgagcacttctgtttgctgcacattgttctgtgtttctgttgc--attctttgacattcttttggtcactgtgacccagcatatctagttatctactctgaccatgctacttgttcagcatttctgctctgaatttttgtgctgttttactcctacag
upper sequence: Vv05s0094g00950.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S314_51V6.1 (Physcomitrella patens), 5'ss of exon 6
TCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGgtaagctaca--gattagcgcc-atcata---ttgaattccgat------tatttacacattcttatcctcttcccaaaaaaatttta-acatattttttattttatttt--att------------------------------
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TCTCTGGTGGATGCGTGCACTGTAAGCGCATGTGGCAGCTTCTAGAGCTCCACTCCCGCATGTGCACTGTGCAAGAGTCGTGCAAAGTGCCCCTTTGCCGgtaaatgatcttgatcaccttctattgcaagtttttatgccatcaaaagatgtttattaattcagattggcgtactcaccaaacttcagatatcccaaccattttgatttccattattttgagctcttgagggtttaatgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110398129|gb|EC964268.1|EC964268EST: CACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAG GCATTTCAAGGAAAAGATGCAGC
genomic: CACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGgtaagctaca ... caaattgtagGCATTTCAAGGAAAAGATGCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCCGGCGGATGTGTTCACTGCAAGCGCATGTGGCAGCTTCTTGAACTGCACTCCCGGATGTGCAGTGAACCTGATTGTTGCAAGGTCCCTCTCTGTAGgtaagctacagattagcgccatcatattgaattccgattatttacacattcttatcctcttcccaaaaaaattttaacatattttttattttattttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa