1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGGGTCAAGACTGAAAAAATTCTTGATCCATGCTGTGAAATCACCCCCTTCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAGgtaagtttctgtctctgtatccttgttgtggcttgttttttcaaatgcttccatgcagttatgattttgggggataaacaagaaatagttacatttcccctgttttccagcag
species | Vitis vinifera |
transcript | Vv05s0077g01480.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGTGCACTTCTCGACAGCAG CAGGAAGGCATTGGACCAGTTGAAGGCGATTTTGACTTTGATGGGTATTCEST: gi|33407656|gb|CF213283.1|CF213283
genomic: GAGTGCACTTCTC-A-AACAGgtaagtttct ... tttccagcagCAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTC
EST: TCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAG CAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCCEST: gi|30130778|gb|CB916117.1|CB916117
genomic: TCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAGgtaagtttct ... tttccagcagCAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCC
EST: AGGATCTCATGAGTGCACTTCTCAAACAG CAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCCEST: gi|71882378|gb|DT031433.1|DT031433
genomic: AGGATCTCATGAGTGCACTTCTCAAACAGgtaagtttct ... tttccagcagCAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCC
EST: GCACTTCTCAAACAG CAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCCEST: gi|33410191|gb|CF215818.1|CF215818
genomic: GCACTTCTCAAACAGgtaagtttct ... tttccagcagCAGGAAGGCATTGGACCAGTTGAAGGCGAATTTGACTTTGATGGGTATTCC
EST: TCTCATGAGTGCACTTCTCAAACAGCAG
genomic: TCTCATGAGTGCACTTCTC-AA-A-CAGgtaagtttct ... tttccagc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTCAAGACTGAAAAAATTCTTGATCCATGCTGTGAAATCACCCCCTTCCCTGAACACTATGTTCAGGAGGATCTCATGAGTGCACTTCTCAAACAGgtaagtttctgtctctgtatccttgttgtggcttgttttttcaaatgcttccatgcagttatgattttgggggataaacaagaaatagttacatttcccctgttttccagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT