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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctcacttctcaaaatcagacctcatgcatagcttaaaaagacatgaaaatcatatcgacgaagacatttaagttgaatggatgattttgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01290.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458263|gb|BM436541.1|BM436541
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110700463|gb|EE078531.1|EE078531
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCATGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTTAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110400864|gb|EC967446.1|EC967446
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110381493|gb|EC934610.1|EC934610
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110373187|gb|EC937404.1|EC937404
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|110397101|gb|EC962822.1|EC962822
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTTAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
EST: gi|77579368|gb|DV218513.1|DV218513
EST:     AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC                         GTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA
genomic: AACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctc ... gattttgcagGTGGAGTAGAATCCGGGCAAGGTCTCAACCGAGTGGTTAAATGTGATAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTCgtgagttctcacttctcaaaatcagacctcatgcatagcttaaaaagacatgaaaatcatatcgacgaagacatttaagttgaatggatgattttgcag

- - - - - - - - - - - - -  CGAAGA