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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttttgtttatttttgtatttttcctggatggggatttctcagtggcttatttgtccttgctggtgttttttttcatag

Basic information

species Vitis vinifera
transcript Vv05s0077g01210.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 6
GCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttttgtttatttttgtatttttcctggatggggatttctcagtggcttatttgtccttgctggtgttttttttcatag
| | |||||||| ||||||||||||||||  || |||||||||||  |||| || ||||| || |||||||||||||| ||||| || |||||    |||||    ||    || |  |     ||| |||   ||  | | |  |  |   ||  | |  ||||||     |   | |   |||
GTTGATGCCTGGTTTTGATCCTGAGATTGCAAAATTGGCCCAAAGGATTCTTATCAATCCTCGTAAAATTGACTATCATACTGGGGTCTTTGCGAGCAAGgttaccttgagattcaactcaagctttctccataatatgaaatcttttgacactattgtaaccttgc-aacatccatatctctag

upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 6
GCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgt-agtttttttgtttatttttgtatttttc---ctggatggggatttctcagtggcttatttgtccttgctggtgttttttttcatag
||| |||||||| ||||||||||| ||||  || || ||||| ||||| || || || || ||||| || |||||||||||||| || ||||||   ||||| |  |      | ||  || |  || |||   | | |     |||||    |  ||   ||    ||| || || ||||||  |   
GCTAATGCCTGGTTTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTCCTTATCAACCCTCGGAATATAGACTATCACACTGGTGTTTTTGCAAGCAAGgttaactagaccttctaccttagctttcttcataccgcagacacatttcatcatctctatgttaaaattgttgatgattttttctag--

upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 6
GCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttttgttta--tttttgtatttttcctggatggggatttctca---gtggcttatttgtcc--ttgctggtgtttt---ttttcatag-
||| |||||||||||||||||||| ||||  || || ||||| |||||||| || ||||| ||||||||||||||||||||||| || ||||||   |||||     |||  | ||  ||  |  |  | | |  ||      |||  ||    ||  | || |||    |   |||| | ||   ||||||    
GCTGATGCCTGGATTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTTCTTATCAATCCTCGGAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgttcacctttgctctagcttcctcaaagtattccagacttttttttgacatagttgaataatctgtatgttgaatggtctattgatttttcaccag

upper sequence: Vv05s0077g01210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 5
GCTTATGCCTGGATTTGATCCTGAGATTGGGAAGTTGGCCCAAAGAGTTCTAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttttgtttatttttgtatttttcctggatggggatttctcag-----tggcttatttgtccttgctggtgttttttttcatag
  | |||||||| |||||||| |||||||  || ||||| || ||  |||| || | ||| || |||||||||||||||||||| || ||||||   ||||||   ||   | | |  |   | |||||  ||    |  || |  |||     | |  || || | | |    || ||  | |   |||
ATTAATGCCTGGGTTTGATCCCGAGATTGCAAAATTGGCGCAGAGGATTCTTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaa-gctcaactcaatctttttaatgatgtgtaatcttccagcatgattgtataattatacctcaaagtattcatgtctctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826900|gb|FQ418991.1|FQ418991
EST:     TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAG                         ATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
genomic: TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttt ... tttttcatagATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
EST: gi|351031178|gb|FQ445005.1|FQ445005
EST:     TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAG                         ATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
genomic: TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttt ... tttttcatagATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
EST: gi|351014262|gb|FQ434851.1|FQ434851
EST:     TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAG                         ATCACTCCAGCCAAGGATGGAAAACCGGTCAGGATTGAGCTTATTGATGCT
genomic: TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttt ... tttttcatagATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
EST: gi|351023248|gb|FQ432631.1|FQ432631
EST:     TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCGTCTAAG                         ATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT
genomic: TAATAAATCCACGGAAAATTGACTATCACACTGGAGTATTTGCATCTAAGgtagtttttt ... tttttcatagATCACTCCAGCCAAGGATGGAAAACCAGTCAGGATTGAGCTTATTGATGCT