1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAGGGGTAGTGAATTGGCTCCTTGGCCAGCTAGGGCGACCGCTCCACCTCCACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgaggcagtacccccttgtctgcaattttttagtttgtaaagatcctttttgttagtgcattgtggatatgtttgcaaatacaacacacacatacaaaagtgtgggcttacaaattgatggtgtggtgcag
species | Vitis vinifera |
transcript | Vv05s0049g01180.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGA-ATATTTGAGAAAGAC-CN GAAATTTGGATGCAGAGGGTTGAEST: gi|110699783|gb|EE077083.1|EE077083
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGA
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|56409526|gb|CX017778.1|CX017778
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|27580186|gb|CB002881.1|CB002881
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|34545569|gb|CF513801.1|CF513801
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|34545484|gb|CF513716.1|CF513716
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|56409685|gb|CX017937.1|CX017937
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|71858970|gb|DT008025.1|DT008025
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|351021835|gb|FQ437220.1|FQ437220
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|56409742|gb|CX017994.1|CX017994
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|71886266|gb|DT035321.1|DT035321
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|349830601|gb|FQ416899.1|FQ416899
genomic: CTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: ACGTCTAGCTGATTTTGGCTAATTCAAA-GAAATATTTGAGAAGGACACG GAAGTTTGGATEST: gi|110716290|gb|EE091140.1|EE091140
genomic: ACGTCTAGCTGATTTTGGCTA-TTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGAT
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|110689293|gb|EE065391.1|EE065391
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAA-GEST: gi|110715719|gb|EE094088.1|EE094088
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|110694546|gb|EE071749.1|EE071749
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|110357653|gb|EC921295.1|EC921295
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: TGAGAA-GACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAGEST: gi|110715151|gb|EE092872.1|EE092872
genomic: TGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
EST: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACG GAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
genomic: CACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgag ... tgtggtgcagGAAGTTTGGATGCAGAGGGTTGAGAGTTACTGGAATCTCTTGAGTCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGGTAGTGAATTGGCTCCTTGGCCAGCTAGGGCGACCGCTCCACCTCCACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgaggcagtacccccttgtctgcaattttttagtttgtaaagatcctttttgttagtgcattgtggatatgtttgcaaatacaacacacacatacaaaagtgtgggcttacaaattgatggtgtggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT