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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGCTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCATTTACAGAGCCCTTAGCTCTCATCACCATGACATGCTTCAAACTGCTGAGCTGgtaactctctttcacacgcacattttactttattcatatatttttatctagatcacatctttctatcatgcgaatatcctgaaaattttgacaaatttactcgaaaatag

Basic information

species Vitis vinifera
transcript Vv05s0020g04850.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
AAACGCTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCATTTACAGAGCCCTTAGCTC------TCATCACCATGACATGCTTCAAACTGCTGAGCTGgtaa--ctctctttcacacgcacattttactttattcatat-atttttatctagatcacatctttctatcatgcgaatatcctgaaaattttgacaaatttactcgaaaatag
      |||||| || ||||||||||||||||| ||||  || ||||| || ||||||||||||||      ||| ||  |||||||||| |||||||||||  |||||    ||| | | |  |      |  |  |||||  ||| || | |  | |    ||      ||||  |  |   | | ||  | |  ||  | |               
------TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgttattattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22014614|gb|BQ799648.1|BQ799648
EST:     CATGACATG-TTC-AACTGCTGAGCTG                         GTGCACCAGTCATCCACCGATGCAGCATCATCACTCCTTGTGACTGCCCTG
genomic: CATGACATGCTTCAAACTGCTGAGCTGgtaactctct ... tcgaaaatagGTGCACCAGTCATCCACCGATGCAGCATCATCACTCCTTGTGACTGCCCTG