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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCAGGCGGTGCCACTTCAGATTCTCTTTCAAAGGAGAATACATATTTTTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaagttcctcctttctattactttttggatggtgataacatgtatttatggtgtttgaagaaatgaattccatggctgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04100.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G23730.1 (Glycine max), 5'ss of exon 3
AAATCAGGCGG-TGCCACTTCAGATTCTCTTTCAAAGGAGAATACATATTTTTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaag------ttcctcctttctat---tactttttggatggtgataacatgtatttatggtgtttgaagaaatgaattccatggctgcag
 ||||| |    |||| ||||||||||| |  |||| |||||||||||||||||| | ||||||||||||| |||||| ||   ||| |  |||  |||||||||       || ||| ||| |||   |  | |||  ||  ||||   |      ||  || ||| ||  ||||    |  |  ||||||
-AATCAAGTATCTGCCTCTTCAGATTCTTTACCAAAAGAGAATACATATTTTTCTAACAACCCTTACTGCAGGGCCTTAGAGCGTGCAACTGATTGTGAATgtaatatatcttttctcttttatatctgtgttcttttaat--tgattggaaaggcctacagttttttaatcaatg----ctttaactgcag

upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G24080.1 (Glycine max), 5'ss of exon 7
AAATCAGGCGG-TGCCACTTCAGATTCTCTTTCAAAGGAGAATACATATTTTTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaa-gttcctcctttctattactttttggatggtgataacatgtatttatggtgtttgaagaa-----atgaattccatggctgcag
 ||||| |    | || ||| ||||||| |  |||| |||||||||||||||||||| ||||||||||||| || ||| |    ||| |  |||  |||||||||  |  ||    ||| |||  |||      ||  |   |  |  ||     |    |  |      || ||| |  |   |||||
-AATCAAGTATCTACCTCTTTAGATTCTTTACCAAAAGAGAATACATATTTTTCTGAAAACCCTTACTGCAGGGTCTTAGTGCGTGCAACTGATTGTGAATgtaatatatctttcatcttttatatttctctatgttcttttagttgattggaaaggccaataattttttatcaatgctttaaatgcag

upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 6
AAATCAGGCGG-TGCCACTTCAGATTCTCTTTCAAAGGAGAATACATATTTTTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaa-gttcctcctttctattactttttggat------ggtgataacatgtatttatggtgtttgaagaaatgaattccatggctgcag
 ||||| |    |||| |||||||||||    |||| || ||||||||||||||||| ||||||||||||| |||||| ||   ||| |  |||  |||||||||  |  ||  | ||| |||  |    | |        ||||   |  |    |  || ||| ||  ||||    |  |   |||||
-AATCAAGTATCTGCCTCTTCAGATTCTTCACCAAAAGATAATACATATTTTTCTGACAACCCTTACTGCAGGGCCTTAGAGCGTGCAATTGATTGTGAATgtaatatatcttttatcttttatatccgtgttcttttaactgattggaaatgccaacagttttttaatcaatg----ctttaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769603|gb|FQ468531.1|FQ468531
EST:     TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAAT                         TTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGAT
genomic: TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaagttcct ... atggctgcagTTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGAT
EST: gi|352780977|gb|FQ466290.1|FQ466290
EST:     TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAAT                         TTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGAT
genomic: TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaagttcct ... atggctgcagTTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGAT
EST: gi|161714238|gb|FC064147.1|FC064147
EST:     TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAAT                         TTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTCGTGAGAT
genomic: TTCTGAGAACCCTTACTGCAAGGCCTTGGAAAATGCTAGGGATATTGAATgtaagttcct ... atggctgcagTTGATCGTGTGGATATTGAGGGGAATGCACACAGTGGTCCACTTGTGAGAT