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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag

Basic information

species Vitis vinifera
transcript Vv05s0020g03660.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g58080.1 (Oryza sativa), 5'ss of exon 6
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgtt---gaatccttgattg--tgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag
| |||  | | || | ||| |  ||||| || || |||||||| ||||| ||||| ||||| ||||||||||| || || ||||||||||||| ||| | |||||||     || ||   |||  ||  |   |||| ||  ||      ||  |||    |    ||| |    | |||  ||    ||   ||  |                                     
TTTGGAGTTCAGTAAAGCAACCCAATATCTTCCTACCCACCTTGTTCATATTCCTTTGGCAAGCAACACCACAATCAGATTCTGCCATGTTTTTCTTCATgtatgttctcacatgctcacttgtttggtttgattgctctagacagctgttggattaggttttcaaccagtgaacagatttacaactgttggaagagttg-----------------------------------

upper sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G073429_T01 (Zea mays), 5'ss of exon 6
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag
| |||||| | || | ||| |  |  ||| | || |||||||| ||||| ||||| ||||| |||||||| || || |||||||||||||||| ||| | ||||||| |     | ||| |      ||      |  || |      ||   |  ||     | ||   ||||    |   | |  || ||   ||||| | | ||                       
TTTGGGATTCAGTAAAGCAACCCAGCATACTCCTACCCACCTTGTTCATATTCCTTTGGCAAGCAACACCGCAATCAGACTCTGCCATGTTTTTCTTCATgtatgttcacagactcattttaccagcttaa----ttgctctggactgtt--gtgttagatttatttctgaaatctgtaaagtctaataccag--tctttgagtattc----------------------

upper sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G28510.1 (Glycine max), 5'ss of exon 7
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag
|||||| | ||||  | ||||||| | | ||||||||||| ||||| |||||| | ||||| ||||| || || || |||||||| ||||| ||||||||||||||| | ||  ||| |   |  ||| |    ||  || || || ||    | |   | |   |||| |   ||  || | |||  ||||| | ||| || | |||| ||      |    |||||||
TGTGGGGTTCTGTGCGACAGCGTAGTGTTTTTCTTCCCACTTTATTTATTTTCTTGTGGCAAGCAACTCCGCAGTCTGACTCTGCTATGTTCTACTTTACgtatgttcattctgtgaatacaatcattgtttttttt-ctatctgtaatgagtttcatgtccactttggtattctcgtatcacttcacagcatttactt-cagttttaaaaaacttcttatccatttcag

upper sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G39220.1 (Glycine max), 5'ss of exon 6
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag
|||||| | ||||  | ||||||| | | |||||||| || || || |||||| | ||||| ||||| || || || |||||||| ||||| ||||||||||||||| | ||  ||| |||||  |||  |   ||   | || || ||    | |   | |   |||| |   ||| || |  ||  | ||| | ||| || | |||| ||      |    |||||||
TGTGGGGTTCTGTACGACAGCGTAGTGTTTTTCTTCCTACTTTGTTTATTTTCTTGTGGCAAGCAACCCCGCAGTCTGACTCTGCTATGTTCTACTTTACgtatgttcattctatgaatgtgatcatt--gtttttttttatctgtaatgagtttcatgtccactttggtattctcttatcacctcacaccatttactt-cagttttaaaaaacttcttatccatttcag

upper sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G32040.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag
| |||| |||  | | ||| |  ||| | ||||| ||||||||||| || ||| | ||||| || ||||||||||| || ||||| ||||||||||| ||||||||    | |    | ||  ||       ||||||   | | ||  ||| | |  ||      |||||  |  | | || |   || |          ||| |||     |     | | |  ||||
TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggttcatg------ccttcatggttattggcttatttc--atattctctggaatgtattaactagtctctaac---------taattttatttggtacaaatttcacctcag