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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAATAGAAGGAGGCCCATGTTATCAGCTCTACACCAAATCCTTTTATGAGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaacagagggagagggagagagtgagagaggaagagggaggaaattaatctattcatgttttgtaatctttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g03200.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791045|gb|FQ480038.1|FQ480038
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCANGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|352786447|gb|FQ479056.1|FQ479056
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAA                         GCAGGACCAGCAAGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351055343|gb|FQ441941.1|FQ441941
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|349822939|gb|FQ399918.1|FQ399918
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCGGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351036339|gb|FQ458714.1|FQ458714
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351039310|gb|FQ461177.1|FQ461177
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351049434|gb|FQ450035.1|FQ450035
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351051773|gb|FQ455187.1|FQ455187
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351035817|gb|FQ463662.1|FQ463662
EST:     AGTCCACTGTCAAACCTAGGCTAAATCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAAGGGTTTTCAGCCATACAGAGG
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGG
EST: gi|351038474|gb|FQ464340.1|FQ464340
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|349824845|gb|FQ414703.1|FQ414703
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351034444|gb|FQ463257.1|FQ463257
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGGTTTTCAGCCATACAGAGGTT
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGG-TTTTCAGCCATACAGAGGTT
EST: gi|351049225|gb|FQ449947.1|FQ449947
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAAGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351048095|gb|FQ441267.1|FQ441267
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351053780|gb|FQ441546.1|FQ441546
EST:     AGTCCACTGTCAAACCTAAGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTTCTCTTGCATTCA
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTT-CTCTTGCATTCA
EST: gi|351037593|gb|FQ462576.1|FQ462576
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCCGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTC
EST: gi|351048233|gb|FQ442203.1|FQ442203
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|352793951|gb|FQ479193.1|FQ479193
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCACGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351030375|gb|FQ432313.1|FQ432313
EST:     AGTCCACTGTCAAACCTAGGCTAAATCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351032566|gb|FQ458931.1|FQ458931
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGA
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGA
EST: gi|351052302|gb|FQ455474.1|FQ455474
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351031893|gb|FQ460150.1|FQ460150
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAG-ACCAGCAGGGGTTTTCAGCCATACAAAGGTTTTCTCTTGCATTC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTC
EST: gi|351022726|gb|FQ428635.1|FQ428635
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|349815985|gb|FQ403626.1|FQ403626
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAAGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351042120|gb|FQ456330.1|FQ456330
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCAT
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCAT
EST: gi|351039295|gb|FQ461162.1|FQ461162
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
EST: gi|351047673|gb|FQ455070.1|FQ455070
EST:     AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAG                         GCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC
genomic: AGTCCACTGTCAAACCTAGGCTAAGTCCGGGTGGCATCTTTGTCACACAGgtatgcaaca ... atctttgcagGCAGGACCAGCAGGGGTTTTCAGCCATACAGAGGTTTTCTCTTGCATTCAC