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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTGCATCCATCCCCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAGgtttgcttacatagttctctttgttatgtcatctttattagaatttgatataatatttttttttccctttttgtgatgtaacttgcattataatcttatgtttgtaacag

Basic information

species Vitis vinifera
transcript Vv05s0020g02870.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02870.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G38810.2 (Glycine max), 5'ss of exon 6
ATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTGCATCCATCCCCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAGgtttgcttacatagttctctttgttatgtcatctttattagaatttgatataatatttttttttccctttttgtgatgtaacttgcattataatcttatgtttgtaacag
||| || ||   ||||||||||||||| || |||||||||||||| || || |||||||  |||||  | ||||| | | | |||||||||||||| ||||| |||| |  |  || | | | |    |     |   |  || ||  | |   | || ||| |   ||||   |                                   
ATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGATTCTGTGCAGCAGAAATGGACAAAGgtatgctgatctgattatatgtttgtctttgaggtaccttaaactttctgtctgacttctttatttgttttccag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110374029|gb|EC938511.1|EC938511
EST:     CCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAG                         AGTGATGTGGTTCATGTCCACGTGAATCCAATTGAGCCCATGCCATCATCT
genomic: CCCAGCACAGACGATTCCTACATGACTGTATACAGCAGAAATGGACTAAGgtttgcttac ... tttgtaacagAGTGATGTGGTTCATGTCCACGTGAATCCAATTGAGCCCATGCCATCATCT