Sequence
atgc intronic sequence ATGC exonic sequenceAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagatgctattcttttcagcaacatttcttcatacttaggttatttgttatcacatcaatatgttgagactcttttagtttcttgggaaaaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G02580.1 (Glycine max), 5'ss of exon 6
AGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagat--gctattcttttcagcaacat---ttcttcatacttaggttatttgttatcacatcaatatgttgagactcttttagtttcttgggaaaaatt
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AGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGTGATCGAGGTGGAAGGGGAATTTCAGTTCCAGATTCCAATGCTGAGTTGCAAGCAAATATTGATgtatgtcagataaggcacatcattcatttacacaaatacttttgtcttagtgaatacttcattcctcttattgataaaagcaattgcagaaaacttagac-----
upper sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G28650.1 (Glycine max), 5'ss of exon 6
AGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagatgctattcttttcagcaacatttcttcatacttaggttatttgttat-cacatcaatatgttgagactcttttagtttcttgggaaaaatt
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AGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAGTTCCAGTTCCAGAGGCCAATGCTGAACTGCAAGCAAATATTGATgtatgtctgattaggcaccttattgtttgagttatgattattgtgatgaatcattaaatttatcaattagcagcaatggtgtagatttcaacttaacagt-
upper sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G10470.1 (Glycine max), 5'ss of exon 6
AGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagatg-------ctattcttttcagcaac-atttctt-catacttag-gttatttgttatcacatcaatatgttgagactcttttagtttcttgggaaaaatt
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AGCTAATGCTGATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGTTGGGAGGGGAATTGCAGTTCCAGAGGCCAATGCCGAACTGCAAGCAAATATTGATgtatgtctgattaggcacccaattcactccagcaattatttcttatatgattaatgtgatgaattattaaatttatcaattagaagcaatggtgtagatt----------
upper sequence: Vv05s0020g01890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G38140.1 (Glycine max), 5'ss of exon 6
AGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagatgctattcttttcagcaacatttcttcatacttaggttatttgttatcacatcaatatgttgagactcttttagtttcttgggaaaaatt------
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AGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGAGATAGAAGTGGAAGGGGAATTCCAGTTCCAGATTCAAATGCTGAGATGCAAGCAAATATTGATgtatgtcagat---aagcaccttatttctttgtgctaatacttatgtc-ttggtgaatacttgattcctctta--ttgataaaagtgattgcagaaaacttagatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77586479|gb|DV222360.1|DV222360EST: GGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGAT AGGCGACGTCTAATAACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTT
genomic: GGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcaga ... ttctaaacagAGGCGACGTCTAATAACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATgtatgtcagatgctattcttttcagcaacatttcttcatacttaggttatttgttatcacatcaatatgttgagactcttttagtttcttgggaaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat