Sequence
atgc intronic sequence ATGC exonic sequenceAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgtgaagtgcccatctttgtgtcttcatttattactgttcatgagttttggataaatataattcaatttgtgtggatccctctcctcttttttcattattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G28660.1 (Glycine max), 5'ss of exon 6
----AGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgtgaagtgcccatctttgtgtcttcatttattactgttcatgagttttggataaatataattca-atttgtgtggatccctctcctcttttttcattattt---
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ATAAAGGTGCACATGCTTATTGGTTAGATAAGGGGATTGTCGAATCTCGTCCTGATCACATCCTGAATCTTATACACTATGAGgtcagaatttcag---tgtgttttattgtgtt-ctgtaaattaacatgatagtagttttatctatatttgacaatttgtatcttaaatttttttttgacatacg
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G10460.2 (Glycine max), 5'ss of exon 5
-----------AGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgtgaagtgcccatctttgtgtcttcatttat-tactgttcatgagttttggataaatataattca-atttgt--gtggatccctctcctcttttttcat-tattt
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AAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGgtcaga-----atttaagtgcattttatcatattctgtaaattaacatgacagtggttttatccatatttggcaattagcctctttaaatttgtttgacatacat
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 5
-----------AGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgt-gaagtgcccatctttgtgtcttcatttattactgttcatgagttttggataaatataattcaatttgtgtgg-atccctctcctcttttttcattattt--
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AAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGATAGTCGTCCTGATCACATCCTGAATCTTATACATTATGAGgtcagagtgccc----tttcatctttagttatttctgtatttactttccttatttttcctattacttctgtttaatatcattgaactgtcgaagtataacttcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34320535|gb|CF373289.1|CF373289EST: GGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAG
genomic: GGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgtgaagtgcc ... tctataacagGATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAGgtgaagtgcccatctttgtgtcttcatttattactgttcatgagttttggataaatataattcaatttgtgtggatccctctcctcttttttcattattt
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc