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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacacttcgtctctgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01780.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtg--tgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacacttcgtctctgcag
|||||| ||||| || |||||||| ||||||||||| ||||| | ||| |||||||| |||||||||||| | |||||  | ||||| || || ||||||||      |||     | |||   |    || |   | || |  | ||  | |        ||  ||  | | |||| |||       
TGTTGCACCAAAGTCCACTCTTGGGAACTGGATGAAGGAAATACAACGGTTTTGTCCTGTTCTGCGTGCTATCAAGTTCTTAGGAAACCCCGAAGAAAGGgtaatccccatgttatctctgtcattcatgtgaacttcttgtggtatattgcta------acatatttgtcatacttggtcag-----

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtc-attcaggccctgctttcagagtaattcttttt-ttatttacagttttccactgcactttgctaacacttcgtctctgcag
|||||| ||||| || ||||||||||||||||| || ||||||| ||| ||||| ||  |||| ||||||||||| ||  | || ||||| || || |||||  ||  | | || | | ||| ||  |  | |  | |     | ||    | ||  |||| || ||  |  || |  || |   |||
TGTTGCACCAAAGTCTACTCTTGGCAACTGGATAAAGGAAATTCAACGGTTTTGCCCTATTCTACGTGCTGTGAAATTCTTAGGGAATCCAGAAGAGAGGgttagtttacttagcctccgctctccaaccattcttatgaacaacttctgatgttgtactgaacatt--ttgcattctgtttggtcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 3
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagt-tttccactgc-actttgctaacacttcgtctctgcag---
|||||| ||||| || |||||||||||||||||||| ||||| | ||||||||| ||  |  | ||||| ||||||||| | || || || || ||  ||||         || | |  || | |     | ||| |  | | |||  |    |  | ||| |  || || || ||||   ||||      
TGTTGCGCCAAAGTCCACTCTTGGCAACTGGATGAAGGAAATCCAACGTTTTTGCCCTATCTTACGTGCCGTGAAGTTTTTGGGGAACCCAGAAGAGCGGgt--------tagtctcaactctaaagtctaatctctaatgacttatggagcctatattgccatgttactgac-cttctcttctgtgtcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacac-ttcgtctctgcag-
 ||||| || || || || ||||||||||||||||| ||||| | ||||||||| ||  | || ||||||||||||||  | || ||||| || ||  ||||  |||  ||| | | |  | |   |    || |    || ||       |   |||| |   || |  |   ||| ||| |||   
GGTTGCGCCGAAGTCCACCCTTGGCAACTGGATGAAGGAAATCCAACGTTTTTGCCCTATCCTACGTGCTGTGAAGTTCTTGGGCAATCCAGAAGAGCGGgttggtc--tcaagtc-tattctttaatcccttatggaatttttactgccatgttactgaatactgatctcttattcttctgtgccag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgcttt-cagagtaattctttttttatttacagttttccactgcactt--tgctaacacttcgtctctgcag----------
 ||||| |||||||| |||||||| || ||||||||||||||||| || ||||| || ||| | |||||||| ||||| ||||| |||||||| ||||||||  | |      ||| ||||   |  | | | |  ||||    ||||| ||      |||   |  ||||      |  |   | ||           
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagact----agccttgctgaaccaaattacttgttttaagattacaattaatgcttgcttctgatgcttttgtctaatggtttcaaataacttcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattc------aggccctgctttcagagtaattcttttt-ttatttacagttttccactgcactttgctaacacttcgtct--ctgcag
 ||||| |||||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| |||||  | ||||||||||| || || |||||||||||  | |  ||        |      | |    | ||   ||    ||  |      |||  ||||   ||    |    || | ||  || |||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtg------tgtcattcaggccctgctttcagagtaattcttttt-ttatttacagttttccactgcactttgctaacacttcgtct--ctgcag
 ||||| |||||||| |||||||| || ||||||||||| ||||| || ||||||||  |||| |||||  | ||||||||||| || ||||||||||||||       | |  |   ||      | |    | ||   ||    ||  |      |||  ||||   ||    |    || | ||  ||||||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagtt---------ttccactgcactttgctaacacttc---gtctctgcag
 ||||| |||||||| |||||||| || ||||||||||||||||| || ||||| || ||| | || ||| | ||||| ||||| |||||||| ||||||||  | |    || |  |     |  | | | |  ||||    || || ||         |||   |||  ||  ||||   ||     |  ||||||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagac---tagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacacttcgtctctgcag
 ||||| |||||||| || ||||| |||||||||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||| || ||||| ||  |||||    || ||    |  || |  ||   ||| |||  ||    |  ||     ||  | ||    ||      |||||
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtcataatagctcttacatttgaatggttgcatttatatgcac---ctggcaggattctgagatatattttaaataatgcag

upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacacttcgtctctgcag
 ||||| |||||||| || ||||| || |||||||| |||||||| || |||||||| || || |||||||||||||| ||||| |||||||| || |||||  |||||       ||||  |   || ||||   | |  |  |  |   | |||     ||    |  |   |      |||||
GGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTTTTGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGgtaagtcatgagctgtctgccatttcag-aatttcatgtaaacgttta---tcccaggattctgaaatgtctgctaactgatgcag