1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTGgtatgcttttgtcagttttatggttatgtcacattgagcctaaatttatgattttgagatgcatgcgatgaatcctaagagtagtccatagactgtggct...
species | Vitis vinifera |
transcript | Vv05s0020g01220.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGGATACCCGAGTGCTGAAAGTATTG GCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGACEST: gi|351032678|gb|FQ462392.1|FQ462392
genomic: GAATGGATACCCGAGTGCTGAAAGTATTGgtatgctttt ... aatatgccagGCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGAC
EST: AGTATCTTGATTCACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTG GCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGACEST: gi|352768767|gb|FQ467979.1|FQ467979
genomic: AGTATCTTGATTCACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTGgtatgctttt ... aatatgccagGCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGAC
EST: CACTCAAAGGAAGGGATACCCGAGTGCTGAAAGTATGG GCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGAC
genomic: CACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTGgtatgctttt ... aatatgccagGCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTGgtatgcttttgtcagttttatggttatgtcacattgagcctaaatttatgattttgagatgcatgcgatgaatcctaagagtagtccatagactgtggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagta