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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACCCAATGGGAACAAGAAGCTGGAAAATGCTTATGAAGATGCACAGAGGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttgtcctctctcctctcctagttggctatggaccataacacttatttgatttttgcagctctatattttgtgcttcttggttgtatgatttcagcaacggccctgcttatgtgaaaatttcttcatacag

Basic information

species Vitis vinifera
transcript Vv05s0020g00460.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717120|gb|FC069558.1|FC069558
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
EST: gi|30321411|gb|CD004673.1|CD004673
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
EST: gi|30135735|gb|CB921073.1|CB921073
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
EST: gi|71862152|gb|DT011207.1|DT011207
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
EST: gi|30321832|gb|CD005094.1|CD005094
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
EST: gi|27581269|gb|CB003964.1|CB003964
EST:     GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCT                         GTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT
genomic: GGATAGCTCTGGGGAAACGGAGGGGCTGTCCTATTTTTCTGTTCTTCTCTgtgagttttg ... cttcatacagGTCAATGCAAGCGGCCAATTCTGTGGTGTTGCAGAGATGATTGGCCCTGTT