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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATATACCAGCTGGAAGTATTCCAAAAGGGATCCCACGGCGTCTCTTCAGCCCAAATCCATGGTCACCAGGCTCATATGAGAATTGGACCATCATAAAGgcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaagagatcactctcttaagatgaaagtatattaatagcctgcacttgaaactcgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G14520.1 (Glycine max), 5'ss of exon 11
---------CTATATACCAGCTGGAAGTATTCCAAAAGGGATCCCACGGCGTCTCTTCAGCCCAAATCCATGGTCACCAGGCTCATATGAGAATTGGACCATCATAAAGgcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaaga-gatca---ctctcttaagatgaaagtatattaatagcctgcacttgaaactcgcag----------------------
          |||||  |||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||| | ||  ||| ||| || |||||  |||||||||||||    | |    | | |||  ||   |||||| |||   || | | || ||| |    |||||| |  |     | |  | |   | | ||    ||  | |  |                      
TGCCATTTCTTATATTTCAGCTGGAAGTATTCCAAAAGGAATCCCTAGGCGTCTCTTCAGTCCAAATCCATGGTCATCTGGTGCATTTGAAAACTGGACTgtcataaaggcatg----agttgttaatatgt-cctaattattttatattaggaaatatgatgattaaatttctctttaatttcttatgttctcagttcttccatggaaattttgatgacatattcaaaattatcaacag

upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G03600.1 (Glycine max), 5'ss of exon 9
---------CTATATACCAGCTGGAAGTATTCCAAAAGGGATCCCACGGCGTCTCTTCAGCCCAAATCCATGGTCACCAGGCTCATATGAGAATTGGACCATCATAAAGgcatgcctaactcaacactgtgtgtctgcatattttttatcttgataaaaga-gatca---ctctcttaagatgaaagtatattaatagcctgcacttgaaactcgcag------------------------
          ||||| ||||||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||  | ||  | | ||| || |||||| |||||||||||||  ||  | |  | |      ||   ||||||       || | | || ||| |    ||||||    |  |  |||  ||||  | | || | |||| |   |                         
TGCCGTTTCTTATATTCCAGCTGGAAGTATTCCAAAAGGAATCCCTAGGCGTCTCTTCAGTCCAAATCCATGGTCCTCTGGTGCCTTTGAAAACTGGACCgtcataaaggcatgattagtttataagt-----cctaattattttgcgctaggaaatatgatgatgaaatttctctttcattttatatattctaatttcttcca-tggaaattttaaatgaaatattcaaaatcaccaacag