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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtatccatcttattatcttctggattattttattttatttttttaaatcagactcactaaattagtcatttgatgtgcactttttctttttacatag

Basic information

species Vitis vinifera
transcript Vv04s0044g02020.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 7
GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtatccatcttattatcttctggattattttattttatttttttaaatcagactcact-aaattagtcatttgatgtgcactttttctttttacatag---
||||||||||| || |||||||| ||| ||||||| ||||| || ||||||||||| || ||| || |||| ||  | |||||||||||| ||||||  || ||     ||   | || || | || ||  || |  ||            |||  || | || |||  | | |       |||||  ||   || ||   
GAACTTGCAGGGATCATTAAACTGTCAACATACTCAAGCTTTAGCTTGTTTGAATGTCGTAAAGTTgttaccggcaccaaatcacctgattctgggaatggcatgtccttttcca-ctccttgcttgtta-atatcgtt-----------aacttgctgagatgagtagtctaacagctctttttttgttactcagaggag

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G09480.1 (Glycine max), 5'ss of exon 6
GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtat---ccatcttattatcttctggattattttattttatttttttaaatcagactcactaaattagtcatttgatgtgcactttttctttttacatag
    ||||||| || |||||||| ||| ||||||| ||||| || ||||||||||| || ||| || ||||  | ||||||||||||||| ||||||  || ||   |  |   | |   |||| | | || | |||  | ||  | | || ||                                              
----TTGCAGGGATCATTAAACTGTCAACATACTCAAGCTTTAGCTTGTTTGAATGTCGTAAAGTTGTTACCAGCTCTAAATCACCTGATTCTGGGAATGGCATgtccttttccactcctttcttgttaatatcatta-acttgctgagatgag----------------------------------------------

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtatccatcttattatcttctggattattttattttatttttttaaatcagactcactaaattagtcatttgatgtgcactttttctttttacatag
|| || || |||| ||||||||| ||||| | ||||||||| |||||||||||||| || ||| || || |  ||||||||||| ||||||| || |  ||||| | |       || | ||  |   ||  |  ||| || | || | | ||  ||   ||   ||||||    | |  | | |    || ||   
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctt-------tcatatgactggcttcgtcatatattgtgaagtaataca-acattatcgatcattt----ttctatctgtgcacttgcag--

upper sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 4
GAACTTGCAGGAATAATTAAACTCTCAGCATACTCTAGCTTCAGTTTGTTTGAATGCCGGAAAATTATTACTGGTTCTAAATCACCTGATCCTGGGAGCGgtatccatcttattatcttctggattattttattttatttttttaaatcagactcactaaattagtcatttgatgtgcactttttctttttacatag
   || || |||| ||||||||| ||||| | ||||||||| |||||||||||||| || ||| || || |  ||||||||||| ||||||| || |  ||||| | |       || | ||  |   ||  |  ||| || | || | | ||  ||   ||   ||||||    | |  | | |    || ||   
---CTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctt-------tcatatgactggcttcgtcatatattgtgaagtaataca-acattatcgatcattt----ttctatctgtgcacttgcag--