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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAAGAATCCCAGTACACAAAGGGCTAAAAGTTTGATGGAAATACCTTGTGCTCATCGTATTGTTGTTAGTGGCACACCAATACAAAACAATCTTAAGgtaatgtcttcactagttataatgtgtacatatacatttttttttgcacttcagtttagtaatagattctatgatgttagagcataagaagataactttacatatctaatgttgtatacttatttttggttgtggttattataacatag

Basic information

species Vitis vinifera
transcript Vv04s0044g01680.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G00400.1 (Glycine max), 5'ss of exon 7
CATAAAGAATCCCAGTACACAAAGGGCTAAAAGTTTGATGGAAATACCTTGTGCTCATCGTATTGTTGTTAGTGGCACACCAATACAAAACAATCTTAAGgtaatgtcttcactagttataatgtgtacatatacatttttttttgcacttcagtttagtaatagattctatgatgttagagca-taagaagataactttacat-atctaatgttgtatacttatttttggttgtggttatta-taacatag
 |||||||| || || ||||||||||||||||||||| | ||||||||  |||||||||| ||| |  |||| ||||| ||  | ||||| || || |||||| | |  |    |    |  ||| || |   |     ||  | |   || |     ||  |   | || || | ||   | | |||  |   || |||| || ||   |  |||| || |  ||||   |  |     ||  |||||   
TATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGCGGCACTCCTTTGCAAAATAACCTGAAGgtattttgat-gtaaacagtcttgtttataatcat-caattaatggttttttaacacggtgtttt-tgctttgctttttttgtagtaatgattgaaatttagattattctaccttgtttaatggttttcattcttaaaacttcctaacag--

upper sequence: Vv04s0044g01680.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G32740.1 (Glycine max), 5'ss of exon 5
CATAAAGAATCCCAGTACACAAAGGGCTAAAAGTTTGATGGAAATACCTTGTGCTCATCGTATTGTTGTTAGTGGCACACCAATACAAAACAATCTTAAGgtaatgtcttcactagttataatgtgtaca--tatacatttttttttgcacttcagtttagtaatagattctatgatgttagagcataagaagataactttacatatctaatgttgtatacttatttttggttgtggttattataacatag------
 |||||||| || || ||||||||||||||||||||| | ||||||||  |||||||| | ||| |  |||| ||||||||  | ||||| ||||| |||||| | |       |  | |  ||| || |   ||  |||  | |||    || |   | ||    | ||||    || |      |   |  |||| || | || |  | | |||||   |  ||  ||||| |  || ||| ||| |        
TATAAAGAACCCTAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATTGCATTATCATTAGCGGCACACCTTTGCAAAATAATCTGAAGgtatttttgatgtaaactgtcttgtttataatcatcaattaatgttt---ttttaacatggt----gtttctgctttgcttttttttttaataataa-ttgaaatttagattattgtaccttgtttaatggttttcattcttaaaacttcctaacag